RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CLVS1Q8IUQ0 354 aaPredicted RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 VPS37AQ8NEZ2 397 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 FOXJ1Q92949 421 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 ISOC1Q96CN7 298 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 NRBF2Q96F24 287 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 MUS81Q96NY9 551 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 PANX1Q96RD7 426 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 MBOAT4Q96T53 435 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 SGK2Q9HBY8 427 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 TM9SF3Q9HD45 589 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 KCNE2Q9Y6J6 123 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 MUC22E2RYF6 1773 aaPredicted RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 CACNA1BQ00975 2339 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 MAGEB17A8MXT2 336 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 E7EQ34 232 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CLIC1O00299 241 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 ARHGAP33O14559 1287 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 SLC16A6O15403 523 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 DPM1O60762 260 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 E2F6O75461 281 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 LRATO95237 230 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CLIC3O95833 236 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 ACADMP11310 421 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CEACAM1P13688 526 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 SPINK2P20155 84 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 ITGB7P26010 798 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 IMPA1P29218 277 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 RPL3P39023 403 aaKnown RBP14.21□□□□□ -0.13
USP4-203ENST00000415188 CDKN2CP42773 168 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 SHC2P98077 582 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 VEZF1Q14119 521 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CAPN13Q6MZZ7 669 aaPredicted RBP14.21□□□□□ -0.13
USP4-203ENST00000415188 MED27Q6P2C8 311 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 TMEM220Q6QAJ8 160 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 RABEPKQ7Z6M1 372 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 ANKRD46Q86W74 232 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 ZZZ3Q8IYH5 903 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CHTF18Q8WVB6 975 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 PKP4Q99569 1192 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 EFCAB11Q9BUY7 163 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 MTG2Q9H4K7 406 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 EHD1Q9H4M9 534 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 POLR1BQ9H9Y6 1135 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CXorf21Q9HAI6 301 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 PRSS16Q9NQE7 514 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 AASDHPPTQ9NRN7 309 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 ATXN10Q9UBB4 475 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 PCDHB11Q9Y5F2 797 aa14.21□□□□□ -0.13
USP4-203ENST00000415188 CACNA1EQ15878 2313 aa14.21□□□□□ -0.14
USP4-203ENST00000415188 EDDM13A0A1B0GTR0 161 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 TMEM202A6NGA9 273 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 H3BM21 787 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 FOXE1O00358 373 aaPredicted RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 NOL3O60936 208 aaKnown RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 ABCB7O75027 752 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 DNAJB5O75953 348 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 IGLV3-19P01714 112 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 GSNP06396 782 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 ABCB1P08183 1280 aaPredicted RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 MYCLP1P12525 358 aaPredicted RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 PCSK6P29122 969 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 SHMT2P34897 504 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 BDKRB1P46663 353 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 RXRGP48443 463 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 TPD52P55327 224 aaPredicted RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 LAPTM5Q13571 262 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 ZIK1Q3SY52 487 aaPredicted RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 PAGE2BQ5JRK9 111 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 WDR45BQ5MNZ6 344 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 GALNT18Q6P9A2 607 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 SPESP1Q6UW49 350 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 SLCO4C1Q6ZQN7 724 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 KCTD8Q6ZWB6 473 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 PIP4P1Q86T03 277 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 ZDHHC21Q8IVQ6 265 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 HDDC3Q8N4P3 179 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 ARL10Q8N8L6 244 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 SETD9Q8NE22 299 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 DNASE2BQ8WZ79 361 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 OR8D1Q8WZ84 308 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 MED8Q96G25 268 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 EGLN2Q96KS0 407 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 LINC00615Q96LM1 132 aaPredicted RBP14.2□□□□□ -0.14
USP4-203ENST00000415188 OR4K3Q96R72 315 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 DUSP26Q9BV47 211 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 EBPLQ9BY08 206 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 ASPSCR1Q9BZE9 553 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 MIR1-1HGQ9H1L0 117 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 IL1RAPQ9NPH3 570 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 TSC22D4Q9Y3Q8 395 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 DYRK1BQ9Y463 629 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 HSPE1-MOB4S4R3N1 261 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 LRRK1Q38SD2 2015 aa14.2□□□□□ -0.14
USP4-203ENST00000415188 C17orf113A0A1B0GUU1 675 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 SPAARA0A1B0GVQ0 90 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 TRIM64BA6NI03 449 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 C1orf105O95561 183 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 SLC16A8O95907 504 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 SEMG1P04279 462 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 SYPP08247 313 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms