RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CCDC71LQ8N9Z2 235 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 C5orf34Q96MH7 638 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 APMAPQ9HDC9 416 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 MRPL41Q8IXM3 137 aaKnown RBP12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PYROXD2Q8N2H3 581 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 GTF2H4Q92759 462 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 B3GNT2Q9NY97 397 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ICMTO60725 284 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 LYPLA2O95372 231 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 OXTRP30559 389 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 OR12D2P58182 307 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 TXNDC5Q8NBS9 432 aaKnown RBP12.5□□□□□ -0.41
COL6A3-206ENST00000409809 CXorf40BQ96DE9 158 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PCDHB11Q9Y5F2 797 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ACOT7O00154 380 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ART1P52961 327 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SLC26A5P58743 744 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 HIST2H3PS2Q5TEC6 136 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 LCN8Q6JVE9 175 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 C3orf67Q6ZVT6 689 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ATG5Q9H1Y0 275 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 OR51V1Q9H2C8 321 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ASF1BQ9NVP2 202 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 TMPRSS11EQ9UL52 423 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 B4GALT4O60513 344 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 CD34P28906 385 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SLC6A6P31641 620 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 TRAM2Q15035 370 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SPHARQ15513 63 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 OR2T33Q8NG76 320 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 RADILQ96JH8 1075 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 OR6C65A6NJZ3 312 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 NEDD8-MDP1E9PL57 170 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 BMP1P13497 986 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 PPP3CBP16298 524 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 RHCEP18577 417 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 CAMK2DQ13557 499 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 RNF212Q495C1 297 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 JAGN1Q8N5M9 183 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 LFNGQ8NES3 379 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 CIPCQ9C0C6 399 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SLIT3O75094 1523 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 DFFBO76075 338 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 PTBP1P26599 531 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SCGB2A2Q13296 93 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 AARDQ4LEZ3 155 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 FBXL20Q96IG2 436 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 MGLLQ99685 303 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SAMD10Q9BYL1 202 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 S1PR1P21453 382 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 STT3AP46977 705 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ELP2Q6IA86 826 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 RAB39BQ96DA2 213 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SYT3Q9BQG1 590 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 TPT1P8Q9HAU6 139 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 MIA3Q5JRA6 1907 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 PPP1R2P9O14990 202 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 HSD17B1P14061 328 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 HOXB9P17482 250 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF33BQ06732 778 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 NUDT13Q86X67 352 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SMARCD2Q92925 531 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 GJD4Q96KN9 370 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-206ENST00000409809 NELL2Q99435 816 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ACBD6Q9BR61 282 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 DNTTIP1Q9H147 329 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM181Q9P2C4 612 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ELFN1P0C7U0 828 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SAMD11Q96NU1 681 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 ALPK1Q96QP1 1244 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 URM1Q9BTM9 101 aaKnown RBP12.49□□□□□ -0.41
COL6A3-206ENST00000409809 SIAEQ9HAT2 523 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 LAMP5Q9UJQ1 280 aa12.49□□□□□ -0.41
COL6A3-206ENST00000409809 MEIOCA2RUB1 952 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 VILLO15195 856 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 HDCP19113 662 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 KCNC3Q14003 757 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MBOAT1Q6ZNC8 495 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TXNDC15Q96J42 360 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TSSK6Q9BXA6 273 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FZD4Q9ULV1 537 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 A3GALT2U3KPV4 340 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 SLC22A31A6NKX4 558 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF705FA8MVS1 300 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PI15O43692 258 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF705DP0CH99 300 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF705BP0CI00 300 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PRKAR1BP31321 381 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 RPP30P78346 268 aaKnown RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF155Q12901 538 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MOB1BQ7L9L4 216 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 LRRC28Q86X40 367 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 SIAH1Q8IUQ4 282 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 AKTIPQ9H8T0 292 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 NPC1O15118 1278 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 LRCH4O75427 683 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 RAD51DO75771 328 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 BAK1Q16611 211 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 BCL2L15Q5TBC7 163 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 RAET1GQ6H3X3 334 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms