RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 BST2Q10589 180 aaKnown RBP4.08□□□□□ -1.76
CLK1-203ENST00000409769 SMARCB1Q12824 385 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 GAGE5Q13069 117 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 GAGE6Q13070 117 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 AIMP2Q13155 320 aaKnown RBP4.08□□□□□ -1.76
CLK1-203ENST00000409769 GPR17Q13304 367 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 GTF2H2Q13888 395 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 MED22Q15528 200 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 PTPN14Q15678 1187 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 MAPRE1Q15691 268 aaKnown RBP4.08□□□□□ -1.76
CLK1-203ENST00000409769 PSMD5Q16401 504 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 LAMA3Q16787 3333 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 CFAP221Q4G0U5 840 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 KRTCAP3Q53RY4 240 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 MDH1BQ5I0G3 518 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 RAB41Q5JT25 222 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 FAM180BQ6P0A1 224 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 PMF1Q6P1K2 205 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 GTF2H2CQ6P1K8 395 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 TMEM154Q6P9G4 183 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 ZNF449Q6P9G9 518 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 PRSS55Q6UWB4 352 aaPredicted RBP4.08□□□□□ -1.76
CLK1-203ENST00000409769 H2AFVQ71UI9 128 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 HIST3H2AQ7L7L0 130 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 KIAA1328Q86T90 577 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 TMEM110Q86TL2 294 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 GPR180Q86V85 440 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 PIGZQ86VD9 579 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 METTL23Q86XA0 190 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 CEP57Q86XR8 500 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 TICAM1Q8IUC6 712 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 THEM5Q8N1Q8 247 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 SCML4Q8N228 414 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 TMEM35BQ8NCS4 154 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 OR1J2Q8NGS2 313 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 UBA3Q8TBC4 463 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 SLC2A14Q8TDB8 520 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 SMARCD1Q96GM5 515 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 B3GALT6Q96L58 329 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 HSFY1Q96LI6 401 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 CPXM1Q96SM3 734 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 NEURL2Q9BR09 285 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 C11orf70Q9BRQ4 267 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 LRRC1Q9BTT6 524 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 UBXN6Q9BZV1 441 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 TSGA10Q9BZW7 698 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 DNAI2Q9GZS0 605 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 THAP2Q9H0W7 228 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 CSTL1Q9H114 145 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 ZBP1Q9H171 429 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 EPB41L5Q9HCM4 733 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 SDF2L1Q9HCN8 221 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 FAM49BQ9NUQ9 324 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 SEPT11Q9NVA2 429 aaKnown RBP4.08□□□□□ -1.76
CLK1-203ENST00000409769 TRMT1Q9NXH9 659 aaKnown RBP4.08□□□□□ -1.76
CLK1-203ENST00000409769 SPG21Q9NZD8 308 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 COPG2Q9UBF2 871 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 STK39Q9UEW8 545 aa4.08□□□□□ -1.76
CLK1-203ENST00000409769 C2orf16Q68DN1 1984 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 RANBP2P49792 3224 aaKnown RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 ZCWPW2A0A1B0GU75 182 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 FAM92AA1XBS5 289 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 TMCO5BA8MYB1 307 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 MYO1GB0I1T2 1018 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 SMAD9O15198 467 aaKnown RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 PAPSS1O43252 624 aaPredicted RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 WDR1O75083 606 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 CALB1P05937 261 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 RB1P06400 928 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 CA3P07451 260 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 FAM200BP0CF97 657 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 FAM106CPP0CH98 169 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 HAPLN1P10915 354 aaPredicted RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 TMEM11P17152 192 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 DNAJB1P25685 340 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 MSNP26038 577 aaKnown RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 MAGEA11P43364 429 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 GLIPR1P48060 266 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 VEGFCP49767 419 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 ROR1Q01973 937 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 OGDHQ02218 1023 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 PDE1CQ14123 709 aaPredicted RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 CRYMQ14894 314 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 RAB6CQ53S08 254 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 C2CD6Q53TS8 623 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 SPOUT1Q5T280 376 aaKnown RBP4.07□□□□□ -1.76
CLK1-203ENST00000409769 LRIF1Q5T3J3 769 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 TPGS2Q68CL5 300 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 KLHL35Q6PF15 583 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 CFAP77Q6ZQR2 320 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 C4orf50Q6ZRC1 276 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 ARCQ7LC44 396 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 SLFN11Q7Z7L1 901 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 NFE4Q86UQ8 179 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 ERICH1Q86X53 443 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 TDHQ8IZJ6 230 aa4.07□□□□□ -1.76
CLK1-203ENST00000409769 RNF10Q8N5U6 811 aaKnown RBP4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms