RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TPK1Q9H3S4 243 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 TRBV5-3A0A0A0MS03 114 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 HEPACAM2A8MVW5 462 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 DNTTP04053 509 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 RETP07949 1114 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 STSP08842 583 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 HOXB3P14651 431 aaPredicted RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 TAP2Q03519 686 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 EPS8Q12929 822 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 MED22Q15528 200 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 LEMD2Q8NC56 503 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 UBTD2Q8WUN7 234 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 DNASE1L2Q92874 299 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 RNF31Q96EP0 1072 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CHCHD6Q9BRQ6 235 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 C11orf49Q9H6J7 331 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 LMCD1Q9NZU5 365 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 DUSP12Q9UNI6 340 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CD36P16671 472 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CTSKP43235 329 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 NPRL3Q12980 569 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 ZNF691Q5VV52 312 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 AMER3Q8N944 861 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 ABHD11Q8NFV4 315 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 OR10G2Q8NGC3 310 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CXorf40AQ8TE69 158 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 ATL1Q8WXF7 558 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 HDAC2Q92769 488 aaKnown RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 APOL4Q9BPW4 351 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 SLC6A16Q9GZN6 736 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 INSL6Q9Y581 213 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 ASCC3Q8N3C0 2202 aaKnown RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 ALPK2Q86TB3 2170 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 AGAP14A8MT82 685 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 MMP12P39900 470 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 TRIM16LQ309B1 348 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 TMIGD1Q6UXZ0 262 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 SLCO4C1Q6ZQN7 724 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 METTL3Q86U44 580 aaKnown RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 STX19Q8N4C7 294 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 GOLM1Q8NBJ4 401 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 HHIPL1Q96JK4 782 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 CCDC115Q96NT0 180 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 COPS4Q9BT78 406 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 TMEM106CQ9BVX2 250 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 QRSL1Q9H0R6 528 aaKnown RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 RETREG1Q9H6L5 497 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 SCN8AQ9UQD0 1980 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 RGS10O43665 173 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 SCN2BO60939 215 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 SLCO2B1O94956 709 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 ZNF30P17039 623 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 PSMA3P25788 255 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 DCKP27707 260 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 ZNF234Q14588 700 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 DUSP7Q16829 419 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 LIPJQ5W064 366 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 CEACAM20Q6UY09 585 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 HTRA1Q92743 480 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 C17orf62Q9BQA9 187 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 ZBTB20Q9HC78 741 aaPredicted RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 TUBA8Q9NY65 449 aaPredicted RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 KRBA1A5PL33 1030 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 TNNI3P19429 210 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 NRIP1P48552 1158 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 GZMMP51124 257 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 MAPK12P53778 367 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 LRIF1Q5T3J3 769 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 CCDC71Q8IV32 467 aaPredicted RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 ZNF547Q8IVP9 402 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 PHF10Q8WUB8 498 aaKnown RBP12.83□□□□□ -0.36
VPS54-203ENST00000409558 SLC5A11Q8WWX8 675 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 FERD3LQ96RJ6 166 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 ZNF639Q9UID6 485 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 CA5BQ9Y2D0 317 aa12.83□□□□□ -0.36
VPS54-203ENST00000409558 FRS3O43559 492 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 CYP7B1O75881 506 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 CKMT1AP12532 417 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 FPR1P21462 350 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 IDUAP35475 653 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 RAB8AP61006 207 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 CDK6Q00534 326 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ZNF763Q0D2J5 394 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 GBX1Q14549 363 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ADPRMQ3LIE5 342 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 PRSS36Q5K4E3 855 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 PRAMEF14Q5SWL7 426 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 PRAMEF13Q5VWM6 474 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 P2RY8Q86VZ1 359 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 CALHM3Q86XJ0 350 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 FNDC8Q8TC99 324 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 OR8D1Q8WZ84 308 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TESCQ96BS2 214 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 FCRL4Q96PJ5 515 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TBC1D14Q9P2M4 693 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ZNF229Q9UJW7 825 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TPRKBQ9Y3C4 175 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 IGLV3-16A0A075B6K0 115 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 PRAMEF10O60809 474 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 MPC1LP0DKB6 136 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms