RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 PMEPA1Q969W9 287 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 C19orf60Q96EN9 201 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 TRIM55Q9BYV6 548 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 SLC6A16Q9GZN6 736 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 RIC8BQ9NVN3 520 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 VPS29Q9UBQ0 182 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 USH1CQ9Y6N9 552 aa15.72■□□□□ 0.11
TSPAN4-208ENST00000409531 FITM1A5D6W6 292 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 GMNCA6NCL1 334 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 LRIT2A6NDA9 550 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 PIP5K1BO14986 540 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 VPS4BO75351 444 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 SEMA3DO95025 777 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 TGFB1P01137 390 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 LINC00032P0C843 101 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 ARFIP1P53367 373 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 ARSFP54793 590 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 UCNP55089 124 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 SKP1P63208 163 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 BTKQ06187 659 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 TGIF1Q15583 401 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 PRTGQ2VWP7 1150 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 ADPRMQ3LIE5 342 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 DEPDC1Q5TB30 811 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 YOD1Q5VVQ6 348 aaPredicted RBP15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 KHDRBS2Q5VWX1 349 aaKnown RBP15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 ADNP2Q6IQ32 1131 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 ABHD13Q7L211 337 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 OR1L3Q8NH93 324 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 GAL3ST3Q96A11 431 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 METTL2AQ96IZ6 378 aaKnown RBP15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 HBEGFQ99075 208 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 CTRCQ99895 268 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 NUF2Q9BZD4 464 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 REXO4Q9GZR2 422 aaKnown RBP15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 TUBB1Q9H4B7 451 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 SYNPO2LQ9H987 977 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 MEAF6Q9HAF1 191 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 APMAPQ9HDC9 416 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 AHSPQ9NZD4 102 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 SLC12A4Q9UP95 1085 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 SRPK3Q9UPE1 567 aa15.71■□□□□ 0.11
TSPAN4-208ENST00000409531 A0A088AWK7 358 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 STMND1H3BQB6 276 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 P2RX6O15547 441 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 SHOX2O60902 331 aaPredicted RBP15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 RSL1D1O76021 490 aaKnown RBP15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 FGF5P12034 268 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 ALOX15P16050 662 aaPredicted RBP15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 ZNF10P21506 573 aaPredicted RBP15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 RAP1GDS1P52306 607 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 HERC3Q15034 1050 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 MUM1Q2TAK8 710 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 HKDC1Q2TB90 917 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 XKR7Q5GH72 579 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 TOR1AIP1Q5JTV8 583 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 NIPAL1Q6NVV3 410 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 TRIM40Q6P9F5 258 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 SCIMPQ6UWF3 145 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 OR2L5Q8NG80 312 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 RGMAQ96B86 450 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 ACPTQ9BZG2 426 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 SPRY4Q9C004 299 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 OR51B5Q9H339 312 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 SCN3AQ9NY46 2000 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 RUVBL1Q9Y265 456 aaKnown RBP15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 SLC22A7Q9Y694 548 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 SEC16AO15027 2179 aa15.7■□□□□ 0.1
TSPAN4-208ENST00000409531 HYKKA2RU49 373 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 NPIPB8E9PQR5 432 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 H3BMH7 237 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 ERI3O43414 337 aaKnown RBP15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 HBQ1P09105 142 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 PRPH2P23942 346 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 HNRNPH1P31943 449 aaKnown RBP15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 TSFMP43897 325 aaKnown RBP15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 HYAL2Q12891 473 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 FAM53BQ14153 422 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 NR6A1Q15406 480 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 SPIN4Q56A73 249 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 SPDYAQ5MJ70 313 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 TMEM214Q6NUQ4 689 aaKnown RBP15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 CPLX4Q7Z7G2 160 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 TMEM126BQ8IUX1 230 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 RNF175Q8N4F7 328 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 KCT2Q8NC54 265 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 MS4A6EQ96DS6 147 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 PPP3R2Q96LZ3 170 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 KCNC2Q96PR1 638 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 F2RL3Q96RI0 385 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 CCNL2Q96S94 520 aaPredicted RBP15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 MACROD1Q9BQ69 325 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 NDC1Q9BTX1 674 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 SLC7A5P2Q9GIP4 190 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 ROGDIQ9GZN7 287 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 SPRTNQ9H040 489 aaPredicted RBP15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 NPHS2Q9NP85 383 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 STARD5Q9NSY2 213 aa15.69■□□□□ 0.1
TSPAN4-208ENST00000409531 PCDHB3Q9Y5E6 796 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms