RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 FAM129BQ96TA1 746 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 MAPKAP1Q9BPZ7 522 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 TRMT61BQ9BVS5 477 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 P2RY12Q9H244 342 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 SERHL2Q9H4I8 314 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 SERHLQ9NQF3 203 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 SNTG1Q9NSN8 517 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 AASSQ9UDR5 926 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CTSAP10619 480 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 HOXC8P31273 242 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 HSD17B2P37059 387 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CLCA4Q14CN2 919 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 PDGFRLQ15198 375 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 TMPRSS11AQ6ZMR5 421 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 NAGSQ8N159 534 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 BPIFB1Q8TDL5 484 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 KLHL42Q9P2K6 505 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 TRIP12Q14669 1992 aaPredicted RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 CROCCQ5TZA2 2017 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 ERI3O43414 337 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 CMPK1P30085 196 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CCT3P49368 545 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 CENPAP49450 140 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 RBBP4Q09028 425 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 EXOC3L2Q2M3D2 409 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CHDHQ8NE62 594 aaPredicted RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 LGALS12Q96DT0 336 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 UCK2Q9BZX2 261 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 MRPS30Q9NP92 439 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 P2RX2Q9UBL9 471 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 RPL36Q9Y3U8 105 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.83■□□□□ 0.45
USP48-204ENST00000400301 RTCAO00442 366 aaKnown RBP17.83■□□□□ 0.45
USP48-204ENST00000400301 CRHBPP24387 322 aa17.83■□□□□ 0.45
USP48-204ENST00000400301 RPS3AP61247 264 aaKnown RBP17.83■□□□□ 0.45
USP48-204ENST00000400301 ST3GAL4Q11206 333 aa17.83■□□□□ 0.45
USP48-204ENST00000400301 TSTQ16762 297 aaKnown RBP17.83■□□□□ 0.45
USP48-204ENST00000400301 COMMD6Q7Z4G1 85 aa17.83■□□□□ 0.45
USP48-204ENST00000400301 TSPYL5Q86VY4 417 aaPredicted RBP17.83■□□□□ 0.45
USP48-204ENST00000400301 RERGQ96A58 199 aaPredicted RBP17.83■□□□□ 0.45
USP48-204ENST00000400301 NEUROD4Q9HD90 331 aa17.83■□□□□ 0.45
USP48-204ENST00000400301 KRT87PA6NCN2 255 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 F11P03951 625 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 ALDH3B2P48448 385 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 CTSCP53634 463 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 TPTEP56180 551 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 KCNC4Q03721 635 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 MTAPQ13126 283 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 FADDQ13158 208 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 FBXO43Q4G163 708 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 GRHL2Q6ISB3 625 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 ZNF438Q7Z4V0 828 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 SLC15A4Q8N697 577 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 DPF3Q92784 378 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 BCAS1O75363 584 aaPredicted RBP17.83■□□□□ 0.44
USP48-204ENST00000400301 SNX4O95219 450 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 CD9P21926 228 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 KHKP50053 298 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 DNASE1L3Q13609 305 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 TPRG1LQ5T0D9 272 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 C10orf62Q5T681 223 aaPredicted RBP17.83■□□□□ 0.44
USP48-204ENST00000400301 AP3S1Q92572 193 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 ISG20Q96AZ6 181 aaKnown RBP17.83■□□□□ 0.44
USP48-204ENST00000400301 ABCB9Q9NP78 766 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 CFL2Q9Y281 166 aa17.83■□□□□ 0.44
USP48-204ENST00000400301 CCDC182A6NF36 153 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 OR10H2O60403 315 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ATP6V1G1O75348 118 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 CATSPEREQ5SY80 951 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 DLEU7Q6UYE1 221 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ZNF655Q8N720 491 aaPredicted RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 TRUB1Q8WWH5 349 aaKnown RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 CRELD1Q96HD1 420 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 DIRAS2Q96HU8 199 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 C11orf49Q9H6J7 331 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 HSFX1Q9UBD0 423 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 KCNK6Q9Y257 313 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ARID2Q68CP9 1835 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 TAB1Q15750 504 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 FAM43BQ6ZT52 329 aaPredicted RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 CACTIN-AS1Q8N1I8 211 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 NATD1Q8N6N6 113 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 FAM86B1Q8N7N1 296 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ABHD11Q8NFV4 315 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ZCCHC10Q8TBK6 192 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ART5Q96L15 291 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 ZDHHC4Q9NPG8 344 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 IL1RAPQ9NPH3 570 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 KLHL33A6NCF5 533 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 CTGFP29279 349 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 SEC13P55735 322 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 NCS1P62166 190 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 RPS26P62854 115 aaKnown RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 TUBA1BP68363 451 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 SLC7A9P82251 487 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 LRRC32Q14392 662 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 DHCR24Q15392 516 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 AAK1Q2M2I8 961 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 FAM180BQ6P0A1 224 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 TUBA1AQ71U36 451 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms