RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 DNAJC11Q9NVH1 559 aa13.57□□□□□ -0.24
CLCNKA-202ENST00000375692 FAM120CQ9NX05 1096 aaKnown RBP13.57□□□□□ -0.24
CLCNKA-202ENST00000375692 VPS29Q9UBQ0 182 aa13.57□□□□□ -0.24
CLCNKA-202ENST00000375692 ZNF221Q9UK13 617 aa13.57□□□□□ -0.24
CLCNKA-202ENST00000375692 MKLN1Q9UL63 735 aa13.57□□□□□ -0.24
CLCNKA-202ENST00000375692 TMEM98Q9Y2Y6 226 aa13.57□□□□□ -0.24
CLCNKA-202ENST00000375692 H3BM21 787 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 PCDH17O14917 1159 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 RGS13O14921 159 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 MTX2O75431 263 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 ETFAP13804 333 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 TNFSF8P32971 234 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 CRATP43155 626 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 SLC15A1P46059 708 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 SELENOWP63302 87 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 IRF8Q02556 426 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 ZMAT1Q5H9K5 638 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 LRRC73Q5JTD7 316 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 LYPLAL1Q5VWZ2 237 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 SERPINA13PQ6UXR4 307 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 TPGS1Q6ZTW0 290 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 CEP19Q96LK0 163 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 CDK5RAP1Q96SZ6 601 aaKnown RBP13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 MGLLQ99685 303 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 WBP11Q9Y2W2 641 aaKnown RBP13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 C1orf226A1L170 272 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 GRXCR1A8MXD5 290 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 ARHGAP33O14559 1287 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 EFCAB14O75071 495 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 GPX5O75715 221 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 FGF18O76093 207 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 SOX6P35712 828 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 PFN3P60673 137 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 AP1S1P61966 158 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 GPR33Q49SQ1 333 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 XKR6Q5GH73 641 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 CPTPQ5TA50 214 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 FAM109BQ6ICB4 259 aaPredicted RBP13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 CRTC1Q6UUV9 634 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 ATCAYQ86WG3 371 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 UBQLNLQ8IYU4 475 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 OR4C15Q8NGM1 316 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 LILRB4Q8NHJ6 448 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 ALG14Q96F25 216 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 SLC30A2Q9BRI3 323 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 CNPPD1Q9BV87 410 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 SH3BP4Q9P0V3 963 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 MUTYHQ9UIF7 546 aa13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 MN1Q10571 1320 aaPredicted RBP13.56□□□□□ -0.24
CLCNKA-202ENST00000375692 RGS5O15539 181 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 HOXC11O43248 304 aaPredicted RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 DPM1O60762 260 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 GUCY1B2O75343 617 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CBSLP0DN79 551 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 JUPP14923 745 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 LAG3P18627 525 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CBSP35520 551 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 TGM4P49221 684 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 ACSM2AQ08AH3 577 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 SMARCB1Q12824 385 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CDH18Q13634 790 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 SSX1Q16384 188 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 MICAQ29983 383 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 ACSM2BQ68CK6 577 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 BBS7Q8IWZ6 715 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CACTIN-AS1Q8N1I8 211 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 C1orf52Q8N6N3 182 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 GPR156Q8NFN8 814 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 OR4K1Q8NGD4 311 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 VANGL1Q8TAA9 524 aaPredicted RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 ZNF461Q8TAF7 563 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CHAC2Q8WUX2 184 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 FOXJ1Q92949 421 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 FCRL1Q96LA6 429 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 OR2A14Q96R47 310 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 TCF25Q9BQ70 676 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 EXOSC4Q9NPD3 245 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 GPATCH2Q9NW75 528 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 ZDHHC3Q9NYG2 299 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 RHCGQ9UBD6 479 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 KLK4Q9Y5K2 254 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 SZT2Q5T011 3432 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 C5orf42Q9H799 3197 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 PNMA8CA0A1B0GUJ8 204 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 HMGA1P17096 107 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 AZGP1P25311 298 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 RAE1P78406 368 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 HTRA4P83105 476 aaPredicted RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CSTF3Q12996 717 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 KRR1Q13601 381 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 GANABQ14697 944 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 PTGES3Q15185 160 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 DDX53Q86TM3 631 aaKnown RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 FAM217AQ8IXS0 508 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 C11orf65Q8NCR3 313 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 DENND6BQ8NEG7 585 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 SLC22A12Q96S37 553 aa13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 KLF16Q9BXK1 252 aaPredicted RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 TMEM121BQ9BXQ6 578 aaPredicted RBP13.55□□□□□ -0.24
CLCNKA-202ENST00000375692 CD84Q9UIB8 345 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms