RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SLAMF8Q9P0V8 285 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 ZNF490Q9ULM2 529 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 PDE10AQ9Y233 779 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 ASCC3Q8N3C0 2202 aaKnown RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 GVINP1Q7Z2Y8 2422 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 ZFC3H1O60293 1989 aaKnown RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 TCRBV5S2A0A599 114 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 PLOD2O00469 737 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 KPNA5O15131 536 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 SLC16A5O15375 505 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 NOL3O60936 208 aaKnown RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 CLDN9O95484 217 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 CD247P20963 164 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 ARPC4P59998 168 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 RPL38P63173 70 aaKnown RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 CYP2A13Q16696 494 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 CYP51A1Q16850 503 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 FGD3Q5JSP0 725 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 LDLRAP1Q5SW96 308 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 CACHD1Q5VU97 1274 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 TMEM220Q6QAJ8 160 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 NEK10Q6ZWH5 1172 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 UBE2R2Q712K3 238 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 LRRC70Q7Z2Q7 622 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 DCP2Q8IU60 420 aaKnown RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 TRAPPC5Q8IUR0 188 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 VRK3Q8IV63 474 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 SLC15A4Q8N697 577 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 PAPD5Q8NDF8 572 aaKnown RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 FAM174AQ8TBP5 190 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 LMX1AQ8TE12 382 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 USP7Q93009 1102 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 CENPNQ96H22 339 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 TMEM74Q96NL1 305 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 LRRC61Q9BV99 259 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 TRIM8Q9BZR9 551 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 GPN2Q9H9Y4 310 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-203ENST00000374116 ARL15Q9NXU5 204 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 SLC23A2Q9UGH3 650 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 ANAPC2Q9UJX6 822 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 KCNK6Q9Y257 313 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 PCDHB3Q9Y5E6 796 aa13.71□□□□□ -0.21
HMGA1-203ENST00000374116 A0A1B0GTQ1 180 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 C4orf47A7E2U8 309 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 FFAR3O14843 346 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 GPR42O15529 346 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 SLCO2B1O94956 709 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 KRT6AP02538 564 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 KRT6BP04259 564 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 HOXC4P09017 264 aaPredicted RBP13.71□□□□□ -0.22
HMGA1-203ENST00000374116 HIST1H2AGP0C0S8 130 aaPredicted RBP13.71□□□□□ -0.22
HMGA1-203ENST00000374116 ACP5P13686 325 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 NME1P15531 152 aaKnown RBP13.71□□□□□ -0.22
HMGA1-203ENST00000374116 EPORP19235 508 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 HIST1H2ADP20671 130 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 KELP23276 732 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 KRT6CP48668 564 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 HNMTP50135 292 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 SP140Q13342 867 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 TUBA3CQ13748 450 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 KIAA0040Q15053 153 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 IMPG1Q17R60 797 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 PYCR3Q53H96 274 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 TTC33Q6PID6 262 aaPredicted RBP13.71□□□□□ -0.22
HMGA1-203ENST00000374116 SLC25A45Q8N413 288 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 OR8J3Q8NGG0 315 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 HIST1H2AHQ96KK5 128 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 ALPK1Q96QP1 1244 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 ZNF347Q96SE7 839 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 HIST1H2AJQ99878 128 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 H2AFJQ9BTM1 129 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 C9orf16Q9BUW7 83 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 LRTM1Q9HBL6 345 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 MAGEL2Q9UJ55 1249 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 CORINQ9Y5Q5 1042 aa13.71□□□□□ -0.22
HMGA1-203ENST00000374116 PABPN1LA6NDY0 278 aaKnown RBP13.7□□□□□ -0.22
HMGA1-203ENST00000374116 TOR1BO14657 336 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 SEC22BO75396 215 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 PIAS2O75928 621 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 CLPXO76031 633 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 KCNH1O95259 989 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 CER1O95813 267 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 TNFP01375 233 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 IL6P05231 212 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 MTHFD1P11586 935 aaKnown RBP13.7□□□□□ -0.22
HMGA1-203ENST00000374116 MYF5P13349 255 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 CTSEP14091 401 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 PCSK2P16519 638 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 CKMT2P17540 419 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 CCNA2P20248 432 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 ARRB1P49407 418 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-203ENST00000374116 PMS2P3Q13401 168 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 KCNJ8Q15842 424 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 DEFB133Q30KQ1 61 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 GGTA1PQ4G0N0 100 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 MBOAT1Q6ZNC8 495 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 IGFN1Q86VF2 1251 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 TBC1D21Q8IYX1 336 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 LILRA3Q8N6C8 439 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms