RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 LINC01465Q8N7H1 131 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 OR10G2Q8NGC3 310 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 CANT1Q8WVQ1 401 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 ZBTB20Q9HC78 741 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 MTMR10Q9NXD2 777 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 MS4A12Q9NXJ0 267 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 DNMT3BQ9UBC3 853 aaKnown RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 LINC01553A4QN01 128 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 NPIPB15A6NHN6 443 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 HSD3B1P14060 373 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 HSD3B2P26439 372 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 TDGQ13569 410 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 DOC2AQ14183 400 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 NFE2L1Q14494 772 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 RABL3Q5HYI8 236 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 GPR153Q6NV75 609 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 SYVN1Q86TM6 617 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 C12orf40Q86WS4 652 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 PLXDC1Q8IUK5 500 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 CHST4Q8NCG5 386 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 PBX4Q9BYU1 374 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 ACTL8Q9H568 366 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 ZNF334Q9HCZ1 680 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 IL26Q9NPH9 171 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 EIF3FO00303 357 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CYP17A1P05093 508 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 RPS6KA3P51812 740 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 TBPL1P62380 186 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 PPP2R2BQ00005 443 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 DCTN2Q13561 401 aaKnown RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 MPP2Q14168 576 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 ADGRE1Q14246 886 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 UNC50Q53HI1 259 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CEACAM20Q6UY09 585 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 LGI4Q8N135 537 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CIB4A0PJX0 185 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 C6orf47O95873 294 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 AOC1P19801 751 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 PKDCCQ504Y2 493 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 ADGRD2Q7Z7M1 963 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 OR4N5Q8IXE1 308 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CHCHD4Q8N4Q1 142 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 BOCQ9BWV1 1114 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 PKD1L3Q7Z443 1732 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 SDHDO14521 159 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CDKN2DP55273 166 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 UNC5DQ6UXZ4 953 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 TMEM151BQ8IW70 566 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 AP3S1Q92572 193 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 PEX11GQ96HA9 241 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 OR1F2PQ96R84 312 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 KCNK13Q9HB14 408 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 OAS3Q9Y6K5 1087 aaKnown RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 C5P01031 1676 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 NADKO95544 446 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 RABIFP47224 123 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 FGL2Q14314 439 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 NRROSQ86YC3 692 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 GEMIN6Q8WXD5 167 aaKnown RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 ARRDC3Q96B67 414 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 REEP4Q9H6H4 257 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 STARD5Q9NSY2 213 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 RHBDL2Q9NX52 303 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CXXC1Q9P0U4 656 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 CASKO14936 926 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 GMFBP60983 142 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 LASP1Q14847 261 aaKnown RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 ZCCHC12Q6PEW1 402 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 TSPEARQ8WU66 669 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 PTGES2Q9H7Z7 377 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 EBF2Q9HAK2 575 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 MARCH5Q9NX47 278 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 RSL24D1Q9UHA3 163 aaKnown RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 POLR1CO15160 346 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-204ENST00000367248 HMGN1P05114 100 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 IL4RP24394 825 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 HOXC13P31276 330 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 TAB1Q15750 504 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 C6orf52Q5T4I8 152 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 OR4K14Q8NGD5 310 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 ZBTB26Q9HCK0 441 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 MCUBQ9NWR8 336 aa11.16□□□□□ -0.62
SYNE1-204ENST00000367248 FANCGO15287 622 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 TBX1O43435 398 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 TMEM44Q2T9K0 475 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 CRB2Q5IJ48 1285 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 PDSS1Q5T2R2 415 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 LCN1P1Q5VSP4 162 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 CCDC116Q8IYX3 515 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 OR4K1Q8NGD4 311 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 ISG20Q96AZ6 181 aaKnown RBP11.15□□□□□ -0.62
SYNE1-204ENST00000367248 ATXN10Q9UBB4 475 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 SETD1AO15047 1707 aaKnown RBP11.15□□□□□ -0.62
SYNE1-204ENST00000367248 SYNGR4O95473 234 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 LYNP07948 512 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 CKMT2P17540 419 aa11.15□□□□□ -0.62
SYNE1-204ENST00000367248 RPS3P23396 243 aaKnown RBP eCLIP11.15□□□□□ -0.62
SYNE1-204ENST00000367248 AK4P27144 223 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-204ENST00000367248 ACADLP28330 430 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms