RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 IGFALSP35858 605 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 RHEBL1Q8TAI7 183 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 MAELQ96JY0 434 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF471Q9BX82 626 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 OR51B5Q9H339 312 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 IFT52Q9Y366 437 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 PCDHGB5Q9Y5G0 923 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 CLCA1A8K7I4 914 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 FAM72CH0Y354 149 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 RP2O75695 350 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 PITX1P78337 314 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 FAM72AQ5TYM5 149 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 MEDAGQ5VYS4 303 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 FAM72DQ6L9T8 149 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 REEP3Q6NUK4 255 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 BORAQ6PGQ7 559 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC36A4Q6YBV0 504 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 FAM72BQ86X60 149 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 NATD1Q8N6N6 113 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 JPH3Q8WXH2 748 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 LMLNQ96KR4 655 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 RIPOR3Q96MK2 946 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 TM9SF2Q99805 663 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 DEC1Q9P2X7 70 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 MGAT4AQ9UM21 535 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 EXOSC1Q9Y3B2 195 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF823P16415 610 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 ARFRP1Q13795 201 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 PUM1Q14671 1186 aaKnown RBP eCLIP18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 KLHL26Q53HC5 615 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 FOXRED2Q8IWF2 684 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 CCDC32Q9BV29 185 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 GKN1Q9NS71 199 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 GRID2O43424 1007 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 GADD45AP24522 165 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 PNCKQ6P2M8 343 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 ATP6V1C2Q8NEY4 427 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 S100A16Q96FQ6 103 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF597Q96LX8 424 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 SMOQ99835 787 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 COQ3Q9NZJ6 369 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 CDH10Q9Y6N8 788 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 CLDN7O95471 211 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 SMPD1P17405 629 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 KELP23276 732 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 CSKP41240 450 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC8B1Q6J4K2 584 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 OSTM1Q86WC4 334 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 DTX3Q8N9I9 347 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 LCN9Q8WX39 176 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 TFAP2CQ92754 450 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 RAB8BQ92930 207 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 OR51I1Q9H343 314 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 WNT9AO14904 365 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 MITFO75030 526 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 OR7A10O76100 309 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 APLP1P51693 650 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 LRRN1Q6UXK5 716 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 KCT2Q8NC54 265 aa18.88■□□□□ 0.61
CCDC88B-202ENST00000356786 G3V2L1 256 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 FLRT2O43155 660 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 BCKDHAP12694 445 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 FSHRP23945 695 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 GRK5P34947 590 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 C1orf189Q5VU69 101 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 OR51G2Q8NGK0 314 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 COQ8BQ96D53 544 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 DOHHQ9BU89 302 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SMOC2Q9H3U7 446 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 ABCB8Q9NUT2 735 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC38A8A6NNN8 435 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC19A2O60779 497 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 ADH1CP00326 375 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 LCKP06239 509 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 JAG1P78504 1218 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SERINC3Q13530 473 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC35F1Q5T1Q4 408 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 NOXRED1Q6NXP6 359 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 TSPYL5Q86VY4 417 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 FRS2Q8WU20 508 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 ACDQ96AP0 544 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SUV39H2Q9H5I1 410 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 CDH7Q9ULB5 785 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 C13orf42A0A1B0GVH6 325 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 B4GAT1O43505 415 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 PCCBP05166 539 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 RPL17P18621 184 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 CAPN3P20807 821 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SP140Q13342 867 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 PRSS48Q7RTY5 328 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 CHERPQ8IWX8 916 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 GRHL3Q8TE85 626 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 RELTQ969Z4 430 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 SH3YL1Q96HL8 342 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 HSPE1-MOB4S4R3N1 261 aa18.87■□□□□ 0.61
CCDC88B-202ENST00000356786 CLDN4O14493 209 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 EPOP01588 193 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 MT-ND5P03915 603 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 AFF1P51825 1210 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms