RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ZNF583Q96ND8 569 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 HCAR1Q9BXC0 346 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 C1orf21Q9H246 121 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 TP63Q9H3D4 680 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 MYNNQ9NPC7 610 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 P4HTMQ9NXG6 502 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CROTQ9UKG9 612 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 SH3D21A4FU49 640 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF749O43361 778 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ANXA4P09525 319 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 FAM87AP0C7U9 286 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 HSD11B1P28845 292 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OR1D4P47884 311 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CES3Q6UWW8 571 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PPP1R14BQ96C90 147 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 NRBF2Q96F24 287 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CCT8L2Q96SF2 557 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 LMF2Q9BU23 707 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ARL8BQ9NVJ2 186 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 MARCH5Q9NX47 278 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PAQR5Q9NXK6 330 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CORO1CQ9ULV4 474 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 SOX13Q9UN79 622 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 H3BN98 237 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 EIF1AYO14602 144 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PDPK1O15530 556 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PDK4Q16654 411 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CDKL4Q5MAI5 379 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 SULT1C3Q6IMI6 304 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 BTNL3Q6UXE8 466 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 GPR180Q86V85 440 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 GBP7Q8N8V2 638 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OR4F15Q8NGB8 312 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OR5L1Q8NGL2 311 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 BRIX1Q8TDN6 353 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 FNDC11Q9BVV2 318 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ALG9Q9H6U8 611 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 TMEM248Q9NWD8 314 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PLAGL1Q9UM63 463 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 MON2Q7Z3U7 1717 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 A0A1W2PRG6 482 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 GGT3PA6NGU5 568 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 H7BY64 318 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PJA2O43164 708 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 WBP4O75554 376 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 TRBC1P01850 177 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 STATHP02808 62 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CCDC166P0CW27 439 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 HK1P19367 917 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 SOX4Q06945 474 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 MERTKQ12866 999 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 SLC5A12Q1EHB4 618 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 DRICH1Q6PGQ1 229 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 NXPE4Q6UWF7 544 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PARS2Q7L3T8 475 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OAFQ86UD1 273 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 C19orf47Q8N9M1 422 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 DDHD1Q8NEL9 900 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 SLC35C1Q96A29 364 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 AKR1E2Q96JD6 320 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PRAP1Q96NZ9 151 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 LACRTQ9GZZ8 138 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 IKZF2Q9UKS7 526 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CCL26Q9Y258 94 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PLAAQ9Y263 795 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 A0A0A6YYC8 382 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 I3L1I5 382 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 HRO43593 1189 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PRAMEF11O60813 436 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 RGS20O76081 388 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OR6B1O95007 311 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ATE1O95260 518 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CLDN9O95484 217 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ZMYND11Q15326 602 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 ZKSCAN8Q15776 578 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OLFML2AQ68BL7 652 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 SLC25A24Q6NUK1 477 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CREG2Q8IUH2 290 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 C1orf87Q8N0U7 546 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PLD5Q8N7P1 536 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 POGLUT1Q8NBL1 392 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 OR9A4Q8NGU2 314 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 M1APQ8TC57 530 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 FIG4Q92562 907 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 CPNE1Q99829 537 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 PCDHGB2Q9Y5G2 931 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 BAZ2BQ9UIF8 2168 aaKnown RBP8.07□□□□□ -1.12
HMGB1-203ENST00000341423 NALCNQ8IZF0 1738 aa8.07□□□□□ -1.12
HMGB1-203ENST00000341423 TBX1O43435 398 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 MFAP3LO75121 409 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 DNAJC8O75937 253 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CHRNB1P11230 501 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 OPRM1P35372 400 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SLC18A2Q05940 514 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CDC20Q12834 499 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CRYMQ14894 314 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 KRTCAP3Q53RY4 240 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 GPRIN3Q6ZVF9 776 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 NANOGNBQ7Z5D8 188 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 TTC9BQ8N6N2 239 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms