RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ALKBH1Q13686 389 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZACNQ401N2 412 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 NHLRC3Q5JS37 347 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 LIPJQ5W064 366 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 C17orf107Q6ZR85 190 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SPATA19Q7Z5L4 167 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 IFNEQ86WN2 208 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 FUNDC1Q8IVP5 155 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MFSD6LQ8IWD5 586 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 OR2D3Q8NGH3 330 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 POC1BQ8TC44 478 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ORAI1Q96D31 301 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 L3HYPDHQ96EM0 354 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 EEF2KMTQ96G04 330 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 C3orf30Q96M34 536 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GATA5Q9BWX5 397 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MRPL37Q9BZE1 423 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MEAF6Q9HAF1 191 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ITM2CQ9NQX7 267 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TAS2R3Q9NYW6 316 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GTSE1Q9NYZ3 720 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CNOT2Q9NZN8 540 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ITSN1Q15811 1721 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 A6NCN8 305 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 KDM4EB2RXH2 506 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TPP1O14773 563 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 KIAA0513O60268 411 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GRIN3BO60391 1043 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 POMCP01189 267 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 POLBP06746 335 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 IFNGR1P15260 489 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF16P17020 682 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GALP22466 123 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SLC2A5P22732 501 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GADD45AP24522 165 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ADH6P28332 368 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 S100A11P31949 105 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MRPL19P49406 292 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GLUD2P49448 558 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 VAMP2P63027 116 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 BLOC1S1P78537 153 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 DLK1P80370 383 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PEX6Q13608 980 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 FCN2Q15485 313 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SGO1Q5FBB7 561 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ARHGAP11AQ6P4F7 1023 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GK5Q6ZS86 529 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PNMA1Q8ND90 353 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 OR10H5Q8NGA6 315 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SMAP2Q8WU79 429 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CLP1Q92989 425 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PHYHIPLQ96FC7 376 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 LRIG1Q96JA1 1093 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 C12orf66Q96MD2 445 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 NEDD4LQ96PU5 975 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 RBP7Q96R05 134 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 RIBC2Q9H4K1 309 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SERHLQ9NQF3 203 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SLC25A13Q9UJS0 675 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SCML1Q9UN30 329 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 V9GYS6 101 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 A0A1W2PN81 502 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CIB4A0PJX0 185 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CYR61O00622 381 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PRKAB2O43741 272 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TLR5O60602 858 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 RDH16O75452 317 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 UBXN7O94888 489 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 RNF224P0DH78 156 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MAPTP10636 758 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 LBPP18428 481 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GIFP27352 417 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ALDH4A1P30038 563 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CHRNA7P36544 502 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GNG10P50151 68 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TGFB2P61812 414 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TLE4Q04727 773 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TROAPQ12815 778 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF528Q3MIS6 628 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CHRFAM7AQ494W8 412 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CAPN13Q6MZZ7 669 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PET117Q6UWS5 81 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CAMKMTQ7Z624 323 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF321PQ8N8H1 164 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF511Q8NB15 262 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TNFRSF14Q92956 283 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 KCTD12Q96CX2 325 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GMCL1Q96IK5 515 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CCDC115Q96NT0 180 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CNTNAP3BQ96NU0 1288 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ACCSQ96QU6 501 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CGRRF1Q99675 332 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SLC29A3Q9BZD2 475 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MCOLN1Q9GZU1 580 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 RNF122Q9H9V4 155 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 EIF2B3Q9NR50 452 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 RRN3P2A6NIE6 340 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 A6NIZ1 184 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms