RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 OR6K2Q8NGY2 324 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 ASB15Q8WXK1 588 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 SUSD3Q96L08 255 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 FABP12A6NFH5 140 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 ACSL4O60488 711 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 ITPKAP23677 461 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.21□□□□□ -0.29
SYNE3-201ENST00000334258 IQCCQ4KMZ1 466 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 CD300LGQ6UXG3 332 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 TP53I13Q8NBR0 393 aaPredicted RBP13.21□□□□□ -0.29
SYNE3-201ENST00000334258 DHRS9Q9BPW9 319 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 ZNF717Q9BY31 904 aaPredicted RBP13.21□□□□□ -0.29
SYNE3-201ENST00000334258 SLC32A1Q9H598 525 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 NDUFAF4Q9P032 175 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 IL17CQ9P0M4 197 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 TRAPPC4Q9Y296 219 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 Q9Y3F1 56 aa13.21□□□□□ -0.29
SYNE3-201ENST00000334258 TRPM7Q96QT4 1865 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 VCANP13611 3396 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.21□□□□□ -0.3
SYNE3-201ENST00000334258 A0A1W2PQ45 241 aaPredicted RBP13.21□□□□□ -0.3
SYNE3-201ENST00000334258 A0A1W2PQY0 241 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 CCNB2O95067 398 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 LAMP1P11279 417 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 ITGALP20701 1170 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 SSTR4P31391 388 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 SRSF11Q05519 484 aaKnown RBP13.21□□□□□ -0.3
SYNE3-201ENST00000334258 ZNF177Q13360 481 aaPredicted RBP13.21□□□□□ -0.3
SYNE3-201ENST00000334258 SSX1Q16384 188 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 NFE2Q16621 373 aaPredicted RBP13.21□□□□□ -0.3
SYNE3-201ENST00000334258 MLIPQ5VWP3 458 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 PLET1Q6UQ28 207 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 RNF130Q86XS8 419 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 GIMAP1Q8WWP7 306 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 CMTM7Q96FZ5 175 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 TCF25Q9BQ70 676 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 BARHL1Q9BZE3 327 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 PCDHGA2Q9Y5H1 932 aa13.21□□□□□ -0.3
SYNE3-201ENST00000334258 CFAP20Q9Y6A4 193 aaKnown RBP13.21□□□□□ -0.3
SYNE3-201ENST00000334258 REV3LO60673 3130 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 WWP2O00308 870 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 TSC22D2O75157 780 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 AP2A2O94973 939 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 SEMG1P04279 462 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 PTGS2P35354 604 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 RPS5P46782 204 aaKnown RBP13.2□□□□□ -0.3
SYNE3-201ENST00000334258 GANABQ14697 944 aaKnown RBP13.2□□□□□ -0.3
SYNE3-201ENST00000334258 ALG1LQ6GMV1 187 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 BBS7Q8IWZ6 715 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 TAGAPQ8N103 731 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 C11orf65Q8NCR3 313 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 OR9Q1Q8NGQ5 310 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 TMEM203Q969S6 136 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 C11orf54Q9H0W9 315 aaPredicted RBP13.2□□□□□ -0.3
SYNE3-201ENST00000334258 ABCB9Q9NP78 766 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 SH3BP4Q9P0V3 963 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 IGHA2P01877 340 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 HIST1H2AGP0C0S8 130 aaPredicted RBP13.2□□□□□ -0.3
SYNE3-201ENST00000334258 HIST1H2ADP20671 130 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 SLC6A4P31645 630 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 ABRQ12979 859 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 PTGES3Q15185 160 aaKnown RBP13.2□□□□□ -0.3
SYNE3-201ENST00000334258 ZNF79Q15937 498 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 UGT8Q16880 541 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 DGKKQ5KSL6 1271 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 GLRX5Q86SX6 157 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 ATCAYQ86WG3 371 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 TRIM69Q86WT6 500 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 CCDC28AQ8IWP9 274 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 CACTIN-AS1Q8N1I8 211 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 VPS37AQ8NEZ2 397 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 HIST1H2AHQ96KK5 128 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 RIPOR3Q96MK2 946 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 MTERF1Q99551 399 aaKnown RBP13.2□□□□□ -0.3
SYNE3-201ENST00000334258 HIST1H2AJQ99878 128 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 H2AFJQ9BTM1 129 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 CMAHPQ9Y471 501 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 V9GYH0 126 aa13.2□□□□□ -0.3
SYNE3-201ENST00000334258 A0A0U1RQF3 1178 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 CDRT1O95170 752 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 TRBC1P01850 177 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ACPPP15309 386 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 CR2P20023 1033 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 HOXC8P31273 242 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 MGAT3Q09327 533 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 FCHO2Q0JRZ9 810 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 HSPA14Q0VDF9 509 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 VEZF1Q14119 521 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PLAG1Q6DJT9 500 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 DPY19L3Q6ZPD9 716 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 DENND1CQ8IV53 801 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 GPR65Q8IYL9 337 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ADGRG2Q8IZP9 1017 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 NAGSQ8N159 534 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 VWA5B2Q8N398 1253 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 YIPF7Q8N8F6 280 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PCSK9Q8NBP7 692 aaKnown RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 CSGALNACT1Q8TDX6 532 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 HMX1Q9NP08 348 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ASAH2Q9NR71 780 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms