RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 ZNF619Q8N2I2 560 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 CMTM7Q96FZ5 175 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 PHOX2BQ99453 314 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 SLC7A8Q9UHI5 535 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 NME7Q9Y5B8 376 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 KIF1AQ12756 1690 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 TP53I11O14683 189 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 ENGP17813 658 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 RAB11BQ15907 218 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 REEP3Q6NUK4 255 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 KCNJ9Q92806 393 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 CNN2Q99439 309 aaKnown RBP8.46□□□□□ -1.05
NIPBL-201ENST00000282516 MMP27Q9H306 513 aa8.46□□□□□ -1.05
NIPBL-201ENST00000282516 PTBP2Q9UKA9 531 aaKnown RBP8.46□□□□□ -1.05
NIPBL-201ENST00000282516 M0R2N6 131 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 WNT9AO14904 365 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 CAPN5O15484 640 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 OIP5O43482 229 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 VEGFAP15692 232 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 MMP8P22894 467 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 RIDAP52758 137 aaKnown RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 AKR1C2P52895 323 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 NCS1P62166 190 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ZNF460Q14592 562 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 KCTD18Q6PI47 426 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 UGT2A3Q6UWM9 527 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 PDZD9Q8IXQ8 264 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 FAM84AQ96KN4 292 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ATRXP46100 2492 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 D6RAR5 112 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 HOXA9P31269 272 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 DSC3Q14574 896 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 CARM1Q86X55 608 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ALDH16A1Q8IZ83 802 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 GPC2Q8N158 579 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 RASGEF1CQ8N431 466 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ATG5Q9H1Y0 275 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 RLIMQ9NVW2 624 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 SAP18O00422 153 aaKnown RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 MATN3O15232 486 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 SHOX2O60902 331 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 CFIP05156 583 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 DLDP09622 509 aaKnown RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 BMP6P22004 513 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 VEGFCP49767 419 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 NIPAL4Q0D2K0 466 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 TRAM2Q15035 370 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ZNF829Q3KNS6 432 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 LRRC37A5PQ49AS3 106 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 CEACAM20Q6UY09 585 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 GALNT10Q86SR1 603 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 FITM2Q8N6M3 262 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ARL6Q9H0F7 186 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 BCAS3Q9H6U6 928 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 EVPLQ92817 2033 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 ZNF850A8MQ14 1090 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 DFNA5O60443 496 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 CCNOP22674 350 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 SP3Q02447 781 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 PTP4A2Q12974 167 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 GPR149Q86SP6 731 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 TRAPPC6BQ86SZ2 158 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 SKA3Q8IX90 412 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 GLYATL1Q969I3 302 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 HMCESQ96FZ2 354 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 WDR77Q9BQA1 342 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 TMEM246Q9BRR3 403 aa8.46□□□□□ -1.06
NIPBL-201ENST00000282516 EVLQ9UI08 416 aaPredicted RBP8.46□□□□□ -1.06
NIPBL-201ENST00000282516 INMT-MINDY4F8WBC2 141 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 B4GALT4O60513 344 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CLN5O75503 358 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 KLK3P07288 261 aaPredicted RBP8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CBSLP0DN79 551 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CHATP28329 748 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CBSP35520 551 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 GALK2Q01415 458 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 NIPAL3Q6P499 406 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 BRAT1Q6PJG6 821 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 LINGO4Q6UY18 593 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 SPATC1Q76KD6 591 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 TAS1R3Q7RTX0 852 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 ZNF808Q8N4W9 903 aaPredicted RBP8.45□□□□□ -1.06
NIPBL-201ENST00000282516 NEIL3Q8TAT5 605 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 GLYATL2Q8WU03 294 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 KCNMB3Q9NPA1 279 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 SMIM35A0A1B0GVV1 85 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CLIC1O00299 241 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 GPR33Q49SQ1 333 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 TMEM35AQ53FP2 167 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 MON1BQ7L1V2 547 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 TMEM234Q8WY98 164 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 KIAA1143Q96AT1 154 aaPredicted RBP8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CGREF1Q99674 301 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 TSSK6Q9BXA6 273 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 ENPP3O14638 875 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 CYB5BO43169 146 aa8.45□□□□□ -1.06
NIPBL-201ENST00000282516 PAK4O96013 591 aaPredicted RBP8.45□□□□□ -1.06
NIPBL-201ENST00000282516 MAT2AP31153 395 aaKnown RBP8.45□□□□□ -1.06
NIPBL-201ENST00000282516 IDH3GP51553 393 aaPredicted RBP8.45□□□□□ -1.06
NIPBL-201ENST00000282516 GSG1LQ6UXU4 331 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms