RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PLEKHM1Q9Y4G2 1056 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 AP3D1O14617 1153 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ALDOCP09972 364 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DSTNP60981 165 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 LPCAT4Q643R3 524 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 Q6ZSR9 355 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 MSANTD1Q6ZTZ1 278 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SLC30A8Q8IWU4 369 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 RASSF5Q8WWW0 418 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 METTL21AQ8WXB1 218 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 OR5P2Q8WZ92 322 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 MAELQ96JY0 434 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CNPPD1Q9BV87 410 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CUEDC1Q9NWM3 386 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ZSCAN32Q9NX65 697 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DLGAP2Q9P1A6 1054 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ZNF860A6NHJ4 632 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 GLOD5A6NK44 160 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DUXAA6NLW8 204 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 TLR4O00206 839 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SERPINA1P01009 418 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 FAM58BPP0C7Q3 252 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DRD2P14416 443 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 RCAN2Q14206 197 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ADGRE1Q14246 886 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SMAD2Q15796 467 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CDKN3Q16667 212 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 IER5LQ5T953 404 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 TTC23Q5W5X9 447 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 OR4C11Q6IEV9 310 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 IYDQ6PHW0 289 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 FAM83HQ6ZRV2 1179 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 NRROSQ86YC3 692 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 PLXDC1Q8IUK5 500 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 PRSS58Q8IYP2 241 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 C10orf53Q8N6V4 93 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 MFSD2AQ8NA29 543 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 C16orf78Q8WTQ4 265 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CANT1Q8WVQ1 401 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 MTERF3Q96E29 417 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 AURKBQ96GD4 344 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CENPNQ96H22 339 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CHID1Q9BWS9 393 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SLC23A2Q9UGH3 650 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DUSP12Q9UNI6 340 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 AGAP14A8MT82 685 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 BTN3A3O00478 584 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 SCAMP2O15127 329 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CEACAM5P06731 702 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CHRM5P08912 532 aaPredicted RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CCT3P49368 545 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 AFF3P51826 1226 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CASP9P55211 416 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 RHDQ02161 417 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CEACAM7Q14002 265 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 TMEM92Q6UXU6 159 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 USP53Q70EK8 1073 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 IKBIPQ70UQ0 350 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 FAM160A2Q8N612 972 aaPredicted RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 OR8K5Q8NH50 307 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 UTP15Q8TED0 518 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 OR52A5Q9H2C5 316 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 RIBC2Q9H4K1 309 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 C8orf4Q9NR00 106 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 H2AFY2Q9P0M6 372 aaPredicted RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 TRPM6Q9BX84 2022 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 A0A0J9YY10 115 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 FAM221BA6H8Z2 402 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 SYPP08247 313 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 RAP2AP10114 183 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 FEN1P39748 380 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 SLC6A12P48065 614 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 SPIBQ01892 262 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 PHF19Q5T6S3 580 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 PRPF38BQ5VTL8 546 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 TRIM46Q7Z4K8 759 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 SETD9Q8NE22 299 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CIB1Q99828 191 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 PRRG3Q9BZD7 231 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 BHLHE41Q9C0J9 482 aaPredicted RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 NDEL1Q9GZM8 345 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 ANKMY1Q9P2S6 941 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 A0A1W2PPC4 97 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 C1orf226A1L170 272 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 ANHXE9PGG2 379 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 IFNW1P05000 195 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 ZCCHC18P0CG32 403 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 NPPBP16860 134 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 ALOX12P18054 663 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 CCR4P51679 360 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 COPZ1P61923 177 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 IL5RAQ01344 420 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 OCA2Q04671 838 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 SCARB2Q14108 478 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 OR4K14Q8NGD5 310 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 THAP11Q96EK4 314 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 EBF2Q9HAK2 575 aa11.1□□□□□ -0.63
VPS4A-201ENST00000254950 ZFR2Q9UPR6 939 aaKnown RBP11.1□□□□□ -0.63
VPS4A-201ENST00000254950 FOXE1O00358 373 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms