RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 YES1P07947 543 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 OR52Z1P0C646 297 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 DLATP10515 647 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 FDPSP14324 419 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 ADRA2CP18825 462 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 AOC1P19801 751 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SAT1P21673 171 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ACHEP22303 614 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 AADACP22760 399 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 FASP25445 335 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PSMB4P28070 264 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PKLRP30613 574 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 GPR183P32249 361 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PCGF2P35227 344 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ELK3P41970 407 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RAD52P43351 418 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CDX1P47902 265 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 LIG4P49917 911 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZNF75DP51815 510 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CRYBA2P53672 197 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CLNS1AP54105 237 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 RAD23AP54725 363 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CSE1LP55060 971 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 MFAP3P55082 362 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 MTCP1P56278 107 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 BACE1P56817 501 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 EVCP57679 992 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PTENP60484 403 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 BTG1P62324 171 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 UBXN2AP68543 259 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 MYL7Q01449 175 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 DHODHQ02127 395 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RBPJQ06330 500 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CACNG1Q06432 222 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 MZT1Q08AG7 82 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 FCHO2Q0JRZ9 810 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ILF2Q12905 390 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 RALGDSQ12967 914 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ITPK1Q13572 414 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 GPR50Q13585 617 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CYLC2Q14093 348 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 GRB14Q14449 540 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZNF273Q14593 569 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 OPCMLQ14982 345 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SHHQ15465 462 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 DUSP5Q16690 384 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PCK2Q16822 640 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 Q1RN00 199 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 HYAL4Q2M3T9 481 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 LETM2Q2VYF4 491 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 MS4A18Q3C1V0 323 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ALDH1L2Q3SY69 923 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 FAM174BQ3ZCQ3 159 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RILPL1Q5EBL4 403 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 BMP2KLQ5H9B9 411 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 C9orf152Q5JTZ5 239 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 KRBOX4Q5JUW0 171 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZNF506Q5JVG8 444 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 LINC00242Q5T6M2 205 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 C9orf66Q5T8R8 295 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ATP1A1-AS1Q5TC04 95 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 C6orf163Q5TEZ5 329 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PLPP4Q5VZY2 271 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 WDR25Q64LD2 544 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 LEMD1Q68G75 181 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TXNRD3NBQ6F5E7 133 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CGB2Q6NT52 195 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 NEPROQ6NW34 567 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CYB5D1Q6P9G0 228 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RFWD3Q6PCD5 774 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PRSS55Q6UWB4 352 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 DHRS11Q6UWP2 260 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 LCLAT1Q6UWP7 414 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PAMR1Q6UXH9 720 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TMEM182Q6ZP80 229 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZBTB49Q6ZSB9 765 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CDHR3Q6ZTQ4 885 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 Q6ZVQ6 151 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 COX8CQ7Z4L0 72 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 GPR141Q7Z602 305 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PRUNE1Q86TP1 453 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RPAINQ86UA6 219 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 IQCHQ86VS3 1027 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RNF130Q86XS8 419 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 FAM219AQ8IW50 185 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 OR4N5Q8IXE1 308 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TDHQ8IZJ6 230 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TAGAPQ8N103 731 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TEX26Q8N6G2 289 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 C4orf32Q8N8J7 132 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZNF491Q8N8L2 437 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 GBP7Q8N8V2 638 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 POGLUT1Q8NBL1 392 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 KCTD6Q8NC69 237 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZNRF1Q8ND25 227 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 C1orf131Q8NDD1 294 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 APPL2Q8NEU8 664 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 OR7A2PQ8NGA2 310 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 OR9Q2Q8NGE9 314 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 OR5M9Q8NGP3 310 aa0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms