RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FAM57AQ8TBR7 257 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 PTCHD1Q96NR3 888 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 FAM129AQ9BZQ8 928 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 PDE10AQ9Y233 779 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 FAM237BA0A1B0GVD1 139 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 CDK2AP1O14519 115 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 NDUFS4O43181 175 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 CDC40O60508 579 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLN3-262ENST00000637699 GALR3O60755 368 aaPredicted RBP18.17■□□□□ 0.5
CLN3-262ENST00000637699 FGGP02679 453 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 SERPIND1P05546 499 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 SLC1A2P43004 574 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 MEOX1P50221 254 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 MLF1P58340 268 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 MEF2AQ02078 507 aaPredicted RBP18.17■□□□□ 0.5
CLN3-262ENST00000637699 ANKRD22Q5VYY1 191 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 AFAP1L2Q8N4X5 818 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 EEF1AKMT1Q8WVE0 214 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 ZKSCAN5Q9Y2L8 839 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 HRH3Q9Y5N1 445 aa18.17■□□□□ 0.5
CLN3-262ENST00000637699 ZCWPW2A0A1B0GU75 182 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 MAGEB16A2A368 324 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 OR1F1O43749 312 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 HAUS5O94927 633 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 NPPBP16860 134 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 JAK1P23458 1154 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 HLCSP50747 726 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 BTG2P78543 158 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 GPS1Q13098 491 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 ARMC3Q5W041 872 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 SULF2Q8IWU5 870 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 PALM2Q8IXS6 379 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 MARVELD2Q8N4S9 558 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 POGLUT1Q8NBL1 392 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 AARSD1Q9BTE6 412 aaKnown RBP18.16■□□□□ 0.5
CLN3-262ENST00000637699 SGPP1Q9BX95 441 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 TRIM45Q9H8W5 580 aaPredicted RBP18.16■□□□□ 0.5
CLN3-262ENST00000637699 C20orf96Q9NUD7 363 aaPredicted RBP18.16■□□□□ 0.5
CLN3-262ENST00000637699 TRMT6Q9UJA5 497 aaKnown RBP18.16■□□□□ 0.5
CLN3-262ENST00000637699 KLF13Q9Y2Y9 288 aaPredicted RBP18.16■□□□□ 0.5
CLN3-262ENST00000637699 COMMD10Q9Y6G5 202 aa18.16■□□□□ 0.5
CLN3-262ENST00000637699 NKX2-6A6NCS4 301 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 SDR42E2A6NKP2 422 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 FAM90A27PA6NNH2 459 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 A8MUA0 341 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 GOLGA8MH3BSY2 632 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 HS6ST1O60243 411 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 PRMT3O60678 531 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 ZNF888P0CJ79 500 aaPredicted RBP18.15■□□□□ 0.5
CLN3-262ENST00000637699 ALOX12P18054 663 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 MAOAP21397 527 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 TRHRP34981 398 aaPredicted RBP18.15■□□□□ 0.5
CLN3-262ENST00000637699 LCTLQ6UWM7 567 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 MAIP1Q8WWC4 291 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 DEFB126Q9BYW3 111 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 UCK2Q9BZX2 261 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 PARVBQ9HBI1 364 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 NPDC1Q9NQX5 325 aaPredicted RBP18.15■□□□□ 0.5
CLN3-262ENST00000637699 FBXO5Q9UKT4 447 aa18.15■□□□□ 0.5
CLN3-262ENST00000637699 INTS1Q8N201 2190 aaKnown RBP18.15■□□□□ 0.5
CLN3-262ENST00000637699 SAGE2PA6NJ88 616 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 GOLGA6L6A8MZA4 724 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 KLRC4-KLRK1H3BQV0 150 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 EIF3FO00303 357 aaPredicted RBP18.14■□□□□ 0.49
CLN3-262ENST00000637699 FCHO1O14526 889 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 PEX1O43933 1283 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 CEP104O60308 925 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 PDE9AO76083 593 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 C8GP07360 202 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 CD1EP15812 388 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 TFEBP19484 476 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 CCND1P24385 295 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 MAGEA6P43360 314 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 CCR8P51685 355 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 ART1P52961 327 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 PWP1Q13610 501 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 TMEM211Q6ICI0 200 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 ASB5Q8WWX0 329 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 PYCR2Q96C36 320 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 NDNQ99608 321 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 HAUS8Q9BT25 410 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 RHBGQ9H310 441 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 RNF6Q9Y252 685 aa18.14■□□□□ 0.49
CLN3-262ENST00000637699 USP27XA6NNY8 438 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 IGFBP2P18065 325 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 CHRNB4P30926 498 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 HNF4AP41235 474 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 RGS4P49798 205 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 GPR85P60893 370 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 SKP1P63208 163 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 PHKG1Q16816 387 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 CMPK2Q5EBM0 449 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 LRRC8EQ6NSJ5 796 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 UGT3A1Q6NUS8 523 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 QSOX2Q6ZRP7 698 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 MYO1HQ8N1T3 1032 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 NFAM1Q8NET5 270 aaPredicted RBP18.13■□□□□ 0.49
CLN3-262ENST00000637699 ABHD11Q8NFV4 315 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 LILRB4Q8NHJ6 448 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 CALML6Q8TD86 181 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms