RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 HSH2DQ96JZ2 352 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 HBEGFQ99075 208 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MAPKAP1Q9BPZ7 522 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 NUAK2Q9H093 628 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DSN1Q9H410 356 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DUSP21Q9H596 190 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SEMA4GQ9NTN9 838 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 THUMPD1Q9NXG2 353 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ANKMY1Q9P2S6 941 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SLC25A13Q9UJS0 675 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DYRK1BQ9Y463 629 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MYO15AQ9UKN7 3530 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 EYSQ5T1H1 3165 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 WDFY3Q8IZQ1 3526 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 IRGMA1A4Y4 181 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 UPK1AO00322 258 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SCAMP3O14828 347 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ANKRD28O15084 1053 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 B4GAT1O43505 415 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 XPNPEP2O43895 674 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 UPK1BO75841 260 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 KCNK5O95279 499 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DDAH2O95865 285 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ITGB1P05556 798 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 HNRNPA1P09651 372 aaKnown RBP eCLIP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PRSS56P0CW18 603 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DBTP11182 482 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ENGP17813 658 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CD247P20963 164 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PRPH2P23942 346 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 IFNA8P32881 189 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MAGEA2P43356 314 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CXCL12P48061 93 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MRPS15P82914 257 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DMPKQ09013 629 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CDC20Q12834 499 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 NPRL3Q12980 569 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SLC14A1Q13336 389 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CAMK2GQ13555 558 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 AGERQ15109 404 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CYP2A13Q16696 494 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SPIN4Q56A73 249 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 RSBN1Q5VWQ0 802 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TPGS2Q68CL5 300 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF544Q6NX49 715 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SLC36A4Q6YBV0 504 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 B3GNT8Q7Z7M8 397 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ZBTB46Q86UZ6 589 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SLC22A16Q86VW1 577 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 RHOXF1Q8NHV9 184 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ASZ1Q8WWH4 475 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TRIM63Q969Q1 353 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MTFMTQ96DP5 389 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 LIN37Q96GY3 246 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DUSP26Q9BV47 211 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 AMBRA1Q9C0C7 1298 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DDX28Q9NUL7 540 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 FLRT1Q9NZU1 646 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SPASTQ9UBP0 616 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DKK3Q9UBP4 350 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 VPS29Q9UBQ0 182 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ERVK-11Q9UQG0 969 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 BTBD3Q9Y2F9 522 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 WBP11Q9Y2W2 641 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 UGT2A1Q9Y4X1 527 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHB14Q9Y5E9 798 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CACNA1BQ00975 2339 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 GNG14A0A1W2PPG7 69 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 hCG_2039718K7EN88 272 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TOR1BO14657 336 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PRRG1O14668 218 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ARHGEF9O43307 516 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 AQP9O43315 295 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 AP2A2O94973 939 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 EFNA1P20827 205 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PRKACGP22612 351 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ACVR2AP27037 513 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CHI3L1P36222 383 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ALDH7A1P49419 539 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ANXA11P50995 505 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 GP2P55259 537 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SLC35A2P78381 396 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SPIBQ01892 262 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 BNC1Q01954 994 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CFHR1Q03591 330 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PRKCDQ05655 676 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 BOP1Q14137 746 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF284Q2VY69 593 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 XKR6Q5GH73 641 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TPRG1LQ5T0D9 272 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ARMC4Q5T2S8 1044 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 KDM4DQ6B0I6 523 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 NOXRED1Q6NXP6 359 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 GPR155Q7Z3F1 870 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PIWIL3Q7Z3Z3 882 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DNAJB7Q7Z6W7 309 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 WDR5BQ86VZ2 330 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ZSWIM9Q86XI8 627 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 BBS7Q8IWZ6 715 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SYTL1Q8IYJ3 562 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms