RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZNF395Q9H8N7 513 aaPredicted RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 FARSBQ9NSD9 589 aaKnown RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 PSD3Q9NYI0 1048 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 DHCR7Q9UBM7 475 aaKnown RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 HAO1Q9UJM8 370 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 SLC22A7Q9Y694 548 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 AHCTF1Q8WYP5 2266 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 A0A1B0GX78 115 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 LRIT2A6NDA9 550 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 DSCR3O14972 297 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 AZIN1O14977 448 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 FOXS1O43638 330 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 SNNO75324 88 aaPredicted RBP18.74■□□□□ 0.59
UPF3A-211ENST00000618700 KRT6AP02538 564 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 KRT6BP04259 564 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 NTRK1P04629 796 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 FGF4P08620 206 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 SMIM10L1P0DMW3 83 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 UROSP10746 265 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 SLC1A6P48664 564 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 KRT6CP48668 564 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 ATP1A2P50993 1020 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 NEK2P51955 445 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 STXBP1P61764 594 aaKnown RBP18.74■□□□□ 0.59
UPF3A-211ENST00000618700 ZNF33BQ06732 778 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 DDX39BQ13838 428 aaKnown RBP18.74■□□□□ 0.59
UPF3A-211ENST00000618700 COL9A2Q14055 689 aaPredicted RBP18.74■□□□□ 0.59
UPF3A-211ENST00000618700 FAM53BQ14153 422 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 MAP7Q14244 749 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 TOR1AIP1Q5JTV8 583 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 KANK2Q63ZY3 851 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 TTLL10Q6ZVT0 673 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 TIPARPQ7Z3E1 657 aaKnown RBP18.74■□□□□ 0.59
UPF3A-211ENST00000618700 ARFGAP2Q8N6H7 521 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 PROKR1Q8TCW9 393 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 CCT6BQ92526 530 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 ZNF75CPQ92670 426 aaPredicted RBP18.74■□□□□ 0.59
UPF3A-211ENST00000618700 GAL3ST3Q96A11 431 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 MVB12AQ96EY5 273 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 SMIM10Q96HG1 83 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 GBP5Q96PP8 586 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 MANSC1Q9H8J5 431 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 DKK4Q9UBT3 224 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 TIMM22Q9Y584 194 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 ASPMQ8IZT6 3477 aa18.74■□□□□ 0.59
UPF3A-211ENST00000618700 FER1L5A0AVI2 2057 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 STMND1H3BQB6 276 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 HSPA4LO95757 839 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 PDYNP01213 254 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 ITGAXP20702 1163 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 RPS13P62277 151 aaKnown RBP18.73■□□□□ 0.59
UPF3A-211ENST00000618700 PHEXP78562 749 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 OCRLQ01968 901 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 NDUFA9Q16795 377 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 SH2D4BQ5SQS7 431 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 KHDRBS2Q5VWX1 349 aaKnown RBP18.73■□□□□ 0.59
UPF3A-211ENST00000618700 ATG16L1Q676U5 607 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 CLEC6AQ6EIG7 209 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 RNF165Q6ZSG1 346 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 DSELQ8IZU8 1212 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 DTWD1Q8N5C7 304 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 ZCCHC10Q8TBK6 192 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 UTP15Q8TED0 518 aaKnown RBP18.73■□□□□ 0.59
UPF3A-211ENST00000618700 SELENOMQ8WWX9 145 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 MS4A6EQ96DS6 147 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 CLIP3Q96DZ5 547 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 CMTM7Q96FZ5 175 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 CNTNAP3BQ96NU0 1288 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 CNTNAP3Q9BZ76 1288 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 SLC7A5P2Q9GIP4 190 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 KLHL31Q9H511 634 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 BRF2Q9HAW0 419 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 TXLNGQ9NUQ3 528 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 THAP1Q9NVV9 213 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 ZDHHC2Q9UIJ5 367 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.73■□□□□ 0.59
UPF3A-211ENST00000618700 RAP2CQ9Y3L5 183 aa18.73■□□□□ 0.59
UPF3A-211ENST00000618700 FRYQ5TBA9 3013 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 TEX51A0A1B0GUA7 166 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 SERTM1A2A2V5 107 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 URADA6NGE7 173 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 TMEM233B4DJY2 109 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 ULK1O75385 1050 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 CRCPO75575 148 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 ETHE1O95571 254 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 TGFB1P01137 390 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 ZNF888P0CJ79 500 aaPredicted RBP18.72■□□□□ 0.59
UPF3A-211ENST00000618700 CSTF3Q12996 717 aaKnown RBP18.72■□□□□ 0.59
UPF3A-211ENST00000618700 UGT3A2Q3SY77 523 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 TMEM35AQ53FP2 167 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 DEPDC1Q5TB30 811 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 ZNF517Q6ZMY9 492 aaPredicted RBP18.72■□□□□ 0.59
UPF3A-211ENST00000618700 ABHD13Q7L211 337 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 PRSS41Q7RTY9 318 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 ZFAND4Q86XD8 727 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 DTX1Q86Y01 620 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 GALNT6Q8NCL4 622 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 OR2L5Q8NG80 312 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 DYDC1Q8WWB3 177 aa18.72■□□□□ 0.59
UPF3A-211ENST00000618700 CKAP2Q8WWK9 683 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms