RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 RIMS3Q9UJD0 308 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 INTS6Q9UL03 887 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TCAF1Q9Y4C2 921 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 A0A087WZ62 844 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PQLC2LA1A4F0 135 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ACOD1A6NK06 481 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 FARS2O95363 451 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 JCHAINP01591 159 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 DCNP07585 359 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TMEM11P17152 192 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 HTR3AP46098 478 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RAB30Q15771 203 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 BMT2Q1RMZ1 405 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PTCHD3Q3KNS1 767 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 HSDL1Q3SXM5 330 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 GPR139Q6DWJ6 353 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PM20D1Q6GTS8 502 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 GADL1Q6ZQY3 521 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 VN1R5Q7Z5H4 357 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ZDHHC21Q8IVQ6 265 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 OR10A6Q8NH74 314 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 LNX1Q8TBB1 728 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TRMT10AQ8TBZ6 339 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RUSC1Q9BVN2 902 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ALG9Q9H6U8 611 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF230Q9UIE0 474 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ACSL6Q9UKU0 697 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CACNG2Q9Y698 323 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 hCG_1818297A0A087WSY0 165 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CLIC3O95833 236 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 SLC25A27O95847 323 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 OR2B8PP59922 312 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 USP41Q3LFD5 358 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 FBXO27Q8NI29 283 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TAS2R8Q9NYW2 309 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 SNNO75324 88 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 BEST1O76090 585 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ALPPP05187 535 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CYP2F1P24903 491 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 MIPP30301 263 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 LCP2Q13094 533 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CDK5R2Q13319 367 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ATPAF1Q5TC12 328 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 FAM171BQ6P995 826 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 LDHDQ86WU2 507 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 COLGALT1Q8NBJ5 622 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 OR4F6Q8NGB9 312 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CDC6Q99741 560 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TMEM175Q9BSA9 504 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 EXOSC1Q9Y3B2 195 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ATG4BQ9Y4P1 393 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 C10orf71Q711Q0 1435 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RAD1O60671 282 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TSPAN15O95858 294 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TRUB2O95900 331 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 GLULP15104 373 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PTPN1P18031 435 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 S100GP29377 79 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PRKXP51817 358 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TAS2R43P59537 309 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TTLL9Q3SXZ7 439 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 OR2A12Q8NGT7 310 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 BSCL2Q96G97 398 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF512Q96ME7 567 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 HERPUD2Q9BSE4 406 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 SLC6A16Q9GZN6 736 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 NID2Q14112 1375 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RFXANKO14593 260 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 THBS1P07996 1170 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 DNM1P34Q6PK57 102 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF705AQ6ZN79 300 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 OR5B12Q96R08 314 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 EIF5A2Q9GZV4 153 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 HACL1Q9UJ83 578 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 V9GYS6 101 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CNTNAP4Q9C0A0 1308 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RPS10-NUDT3A0A1W2PQS6 291 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 C2P06681 752 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CSF1RP07333 972 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RPS10P46783 165 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RPS8P62241 208 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 CACNB2Q08289 660 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 RAB11BQ15907 218 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TMEM161BQ8NDZ6 487 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 MALSU1Q96EH3 234 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 TRAF4Q9BUZ4 470 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 C12orf65Q9H3J6 166 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 NT5MQ9NPB1 228 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ZFP57Q9NU63 452 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 BCORQ6W2J9 1755 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ARVCFO00192 962 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 SC5DO75845 299 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 GADD45GO95257 159 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 SLC9B1Q4ZJI4 515 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PPM1JQ5JR12 505 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 LCN8Q6JVE9 175 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 FAM83AQ86UY5 434 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 ZSWIM9Q86XI8 627 aa4.8□□□□□ -1.64
VPS13D-213ENST00000613099 MTFMTQ96DP5 389 aaKnown RBP4.8□□□□□ -1.64
VPS13D-213ENST00000613099 PGAP3Q96FM1 320 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms