RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	KRT6A	P02538	564 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	KRT6B	P04259	564 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ANXA6	P08133	673 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CELA2B	P08218	269 aa	Predicted RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	HRH2	P25021	359 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC19A1	P41440	591 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	KRT6C	P48668	564 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	IRF8	Q02556	426 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CHIT1	Q13231	466 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	FAM98B	Q52LJ0	330 aa	Known RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	XKR6	Q5GH73	641 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	LIPJ	Q5W064	366 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	GLYAT	Q6IB77	296 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SUSD1	Q6UWL2	747 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	MSANTD1	Q6ZTZ1	278 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	GKN2	Q86XP6	184 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	TRIM48	Q8IWZ4	208 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SDR16C5	Q8N3Y7	309 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	L3MBTL4	Q8NA19	623 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	FAM46D	Q8NEK8	389 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	LMX1A	Q8TE12	382 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ZFPM2	Q8WW38	1151 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC13A3	Q8WWT9	602 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SH3KBP1	Q96B97	665 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	NMD3	Q96D46	503 aa	Known RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	MPP4	Q96JB8	637 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ZC3H10	Q96K80	434 aa	Known RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	TUBA1C	Q9BQE3	449 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	C1orf50	Q9BV19	199 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CHID1	Q9BWS9	393 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ERVMER34-1	Q9H9K5	563 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	DDX18	Q9NVP1	670 aa	Known RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ZSCAN32	Q9NX65	697 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	DYRK1B	Q9Y463	629 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	KNL1	Q8NG31	2342 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	EML5	Q05BV3	1969 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	TRBV23OR9-2	A0A075B6M9	112 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341		A0A1B0GVT2	93 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	VIP	P01282	170 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	RET	P07949	1114 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	PKLR	P30613	574 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	MYBPC3	Q14896	1274 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	ABRAXAS2	Q15018	415 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	ZBED5	Q49AG3	693 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	RFTN2	Q52LD8	501 aa	Predicted RBP	11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	CYBRD1	Q53TN4	286 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	PRAMEF14	Q5SWL7	426 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	PRAMEF13	Q5VWM6	474 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	ATG9B	Q674R7	924 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	LCTL	Q6UWM7	567 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	OR2L8	Q8NGY9	312 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	LCN9	Q8WX39	176 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	NEIL2	Q969S2	332 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	CLMP	Q9H6B4	373 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	MAGIX	Q9H6Y5	334 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	POT1	Q9NUX5	634 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	GMPR2	Q9P2T1	348 aa	Known RBP	11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	CPNE7	Q9UBL6	633 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	PILRB	Q9UKJ0	227 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	DOLK	Q9UPQ8	538 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	TMED5	Q9Y3A6	229 aa		11.22	□□□□□ -0.61
VRK3-223	ENST00000601341	PRAMEF33	A0A0G2JMD5	474 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	CCDC160	A6NGH7	325 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341		C9JVG2	144 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341		E7EQ34	232 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	EI24	O14681	340 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	AQP9	O43315	295 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	ERN1	O75460	977 aa	Known RBP	11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	RSL1D1	O76021	490 aa	Known RBP	11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SCEL	O95171	688 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SP9	P0CG40	484 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	PRPS2	P11908	318 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	JUP	P14923	745 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	ETS2	P15036	469 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SHMT2	P34897	504 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	HNF4A	P41235	474 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	CASP2	P42575	452 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	HTR6	P50406	440 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	ALDH3A2	P51648	485 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	ADARB1	P78563	741 aa	Known RBP	11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	CHRNB3	Q05901	458 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	CPSF6	Q16630	551 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC2A7	Q6PXP3	512 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SLCO4C1	Q6ZQN7	724 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	IFNE	Q86WN2	208 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SYT12	Q8IV01	421 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	NAGS	Q8N159	534 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SVOPL	Q8N434	492 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	DTWD1	Q8N5C7	304 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	C2orf73	Q8N5S3	287 aa	Predicted RBP	11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	LMNTD1	Q8N9Z9	388 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	LINC01555	Q8NAE3	123 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	AVL9	Q8NBF6	648 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	ZBTB44	Q8NCP5	570 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	ZDHHC1	Q8WTX9	485 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC5A11	Q8WWX8	675 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	GTF2H4	Q92759	462 aa		11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	AURKB	Q96GD4	344 aa	Predicted RBP	11.21	□□□□□ -0.61
VRK3-223	ENST00000601341	METTL2A	Q96IZ6	378 aa	Known RBP	11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms