RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 LINC01555Q8NAE3 123 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 CCDC197Q8NCU1 140 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 MAP3K3Q99759 626 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 EBF4Q9BQW3 602 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 SGPP1Q9BX95 441 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 NUF2Q9BZD4 464 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 KIR3DX1Q9H7L2 352 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 ACTR8Q9H981 624 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 KCNK13Q9HB14 408 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 VPS4AQ9UN37 437 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 STK38LQ9Y2H1 464 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 TRAF6Q9Y4K3 522 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 TIMM22Q9Y584 194 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 COLEC10Q9Y6Z7 277 aa12.12□□□□□ -0.47
UPF1-208ENST00000600012 MDC1Q14676 2089 aaKnown RBP12.11□□□□□ -0.47
UPF1-208ENST00000600012 OR5K3A6NET4 321 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 TTLL8A6PVC2 850 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 E7EQ34 232 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 MATN2O00339 956 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 PRAMEF4O60810 478 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 DIAPH2O60879 1101 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 CPNE3O75131 537 aaKnown RBP12.11□□□□□ -0.47
UPF1-208ENST00000600012 CAPN1P07384 714 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 ALOX15P16050 662 aaPredicted RBP12.11□□□□□ -0.47
UPF1-208ENST00000600012 PSMB5P28074 263 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 NDUFS1P28331 727 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 RAB28P51157 221 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 PGDP52209 483 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 HSD11B2P80365 405 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 ARHGAP19Q14CB8 494 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 PRAMEF9Q5VWM5 478 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 MILR1Q7Z6M3 343 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 TMPRSS11BQ86T26 416 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 OOSP2Q86WS3 158 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 MYLK4Q86YV6 388 aaPredicted RBP12.11□□□□□ -0.47
UPF1-208ENST00000600012 CLYBLQ8N0X4 340 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 CARFQ8N187 725 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 GALNT11Q8NCW6 608 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 OR2L8Q8NGY9 312 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 OR8K5Q8NH50 307 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 TWIST2Q8WVJ9 160 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 SLC25A23Q9BV35 468 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 ACAT2Q9BWD1 397 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 TRPS1Q9UHF7 1281 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 BTRCQ9Y297 605 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 RNF11Q9Y3C5 154 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 DYRK1BQ9Y463 629 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 PCDHGA9Q9Y5G4 932 aaKnown RBP12.11□□□□□ -0.47
UPF1-208ENST00000600012 PTGDR2Q9Y5Y4 395 aa12.11□□□□□ -0.47
UPF1-208ENST00000600012 GOLGA8QA0A0J9YX86 632 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 A0A1W2PPV9 198 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 GOLGA8OA6NCC3 632 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 ZNF839A8K0R7 811 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 GOLGA8NF8WBI6 632 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 SLCO1B7G3V0H7 640 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 CLGNO14967 610 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 HDAC3O15379 428 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 SCRG1O75711 98 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 AGFG2O95081 481 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 ZBTB11O95625 1053 aaPredicted RBP12.1□□□□□ -0.47
UPF1-208ENST00000600012 FGF4P08620 206 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 UROSP10746 265 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 HMOX2P30519 316 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 HSD17B2P37059 387 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 HTR6P50406 440 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 HK2P52789 917 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 RPS18P62269 152 aaKnown RBP12.1□□□□□ -0.47
UPF1-208ENST00000600012 YBX1P67809 324 aaKnown RBP12.1□□□□□ -0.47
UPF1-208ENST00000600012 BTKQ06187 659 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 CHIT1Q13231 466 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 SLC9B1Q4ZJI4 515 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 FAM199XQ6PEV8 388 aaPredicted RBP12.1□□□□□ -0.47
UPF1-208ENST00000600012 EPGNQ6UW88 154 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 SCIMPQ6UWF3 145 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 LCTLQ6UWM7 567 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 TMEM126BQ8IUX1 230 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 LURAP1LQ8IV03 231 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 OR4E2Q8NGC2 313 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 CPT1CQ8TCG5 803 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 ZFPM2Q8WW38 1151 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 LCN9Q8WX39 176 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 SMPDL3AQ92484 453 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 NEIL2Q969S2 332 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 FAR2Q96K12 515 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 SIKE1Q9BRV8 207 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 NTMT1Q9BV86 223 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 RAB11FIP5Q9BXF6 653 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 AKIRIN1Q9H9L7 192 aaPredicted RBP12.1□□□□□ -0.47
UPF1-208ENST00000600012 HRASLS2Q9NWW9 162 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 VTI1BQ9UEU0 232 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 TAC3Q9UHF0 121 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 FARSAQ9Y285 508 aaKnown RBP12.1□□□□□ -0.47
UPF1-208ENST00000600012 ARL2BPQ9Y2Y0 163 aa12.1□□□□□ -0.47
UPF1-208ENST00000600012 NOTCH2Q04721 2471 aa12.09□□□□□ -0.47
UPF1-208ENST00000600012 FFAR3O14843 346 aa12.09□□□□□ -0.47
UPF1-208ENST00000600012 PIP5K1BO14986 540 aa12.09□□□□□ -0.47
UPF1-208ENST00000600012 GPR42O15529 346 aa12.09□□□□□ -0.47
UPF1-208ENST00000600012 KDM1AO60341 852 aa12.09□□□□□ -0.47
UPF1-208ENST00000600012 CLDN9O95484 217 aa12.09□□□□□ -0.47
UPF1-208ENST00000600012 ENO1P06733 434 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms