RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PAGE2BQ5JRK9 111 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 KIRREL2Q6UWL6 708 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 SHISA5Q8N114 240 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 PTGR2Q8N8N7 351 aaPredicted RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 CLEC1AQ8NC01 280 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 SEC16BQ96JE7 1060 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 MRPL57Q9BQC6 102 aaKnown RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 SLC25A23Q9BV35 468 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 AICDAQ9GZX7 198 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 MRPL46Q9H2W6 279 aaKnown RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 KLHL31Q9H511 634 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.11□□□□□ -0.316e-7■■■■■ 32.1
UPF1-205ENST00000598209 TBK1Q9UHD2 729 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 FBXL4Q9UKA2 621 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 ZNF490Q9ULM2 529 aaPredicted RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 TMCO1Q9UM00 188 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 ANGPTL3Q9Y5C1 460 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 TNPO3Q9Y5L0 923 aaKnown RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 V9GYY5 206 aaPredicted RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 A6NL46 340 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 K7EM74 188 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 SMIM24O75264 130 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 JRKO75564 520 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 CLEC3AO75596 197 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 CEACAM4O75871 244 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 WFS1O76024 890 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 SIX3O95343 332 aaPredicted RBP13.1□□□□□ -0.31
UPF1-205ENST00000598209 SMIM10L1P0DMW3 83 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 NR1D1P20393 614 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 HSD17B3P37058 310 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 XCR1P46094 333 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 SLCO1A2P46721 670 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 RAB8AP61006 207 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 STXBP1P61764 594 aaKnown RBP13.1□□□□□ -0.31
UPF1-205ENST00000598209 PCDH1Q08174 1060 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 GTF2H2Q13888 395 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 E2F2Q14209 437 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 HIST2H2ACQ16777 129 aaPredicted RBP13.1□□□□□ -0.31
UPF1-205ENST00000598209 TUBB8Q3ZCM7 444 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 MFSD4BQ5TF39 518 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 HIST2H2AA3Q6FI13 130 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 FAAH2Q6GMR7 532 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 ADNP2Q6IQ32 1131 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 TCTN3Q6NUS6 607 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 NIPAL1Q6NVV3 410 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 GTF2H2CQ6P1K8 395 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 GOLGA7Q7Z5G4 137 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 VN1R5Q7Z5H4 357 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 CNPY4Q8N129 248 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 FDCSPQ8NFU4 85 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 OR5T3Q8NGG3 340 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 MZB1Q8WU39 189 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 C8orf44Q96CB5 159 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 PHF21BQ96EK2 531 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 SMIM10Q96HG1 83 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 VPS50Q96JG6 964 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 MESP1Q9BRJ9 268 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 RHBGQ9H310 441 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 ATP13A2Q9NQ11 1180 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 MKL2Q9ULH7 1088 aa13.1□□□□□ -0.31
UPF1-205ENST00000598209 PCDHGA9Q9Y5G4 932 aaKnown RBP13.1□□□□□ -0.31
UPF1-205ENST00000598209 TLN1Q9Y490 2541 aaKnown RBP13.1□□□□□ -0.31
UPF1-205ENST00000598209 BSNQ9UPA5 3926 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 LRIT2A6NDA9 550 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 SMIM23A6NLE4 172 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 B8ZZF3 427 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 C4orf51C9J302 202 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 STX16-NPEPL1H3BU86 382 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 GOLGA8RI6L899 631 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 E2F3O00716 465 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 STX16O14662 325 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 CHST10O43529 356 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 DNAJB6O75190 326 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 ALOX12BO75342 701 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 PDGFAP04085 211 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 ACPPP15309 386 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 EEF1DP29692 281 aaKnown RBP13.09□□□□□ -0.31
UPF1-205ENST00000598209 HNRNPH1P31943 449 aaKnown RBP13.09□□□□□ -0.31
UPF1-205ENST00000598209 PGDP52209 483 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 EFNA3P52797 238 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 OLR1P78380 273 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 AIMP2Q13155 320 aaKnown RBP13.09□□□□□ -0.31
UPF1-205ENST00000598209 GRHL2Q6ISB3 625 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 METTL2BQ6P1Q9 378 aaKnown RBP13.09□□□□□ -0.31
UPF1-205ENST00000598209 WDR93Q6P2C0 686 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 MED27Q6P2C8 311 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 ASB18Q6ZVZ8 466 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 PTRH1Q86Y79 214 aaKnown RBP13.09□□□□□ -0.31
UPF1-205ENST00000598209 TDRPQ86YL5 185 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 OR11G2Q8NGC1 345 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 ACMSDQ8TDX5 336 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 UBE2E3Q969T4 207 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 GAL3ST3Q96A11 431 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 MS4A6EQ96DS6 147 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 PEX11GQ96HA9 241 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 NUDT9Q9BW91 350 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 RBCK1Q9BYM8 510 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 VN1R1Q9GZP7 353 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 PPCSQ9HAB8 311 aa13.09□□□□□ -0.31
UPF1-205ENST00000598209 G3BP2Q9UN86 482 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms