RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PCDHB3Q9Y5E6 796 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 DNAJC15Q9Y5T4 150 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 PIEZO2Q9H5I5 2752 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 NUP210LQ5VU65 1888 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 SLCO1B7G3V0H7 640 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 H0YIV9 168 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 HDAC3O15379 428 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 ZSCAN9O15535 394 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 EFSO43281 561 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 SRPX2O60687 465 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 EZRP15311 586 aaKnown RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 CXCR2P25025 360 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 CD82P27701 267 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 HMOX2P30519 316 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 BCL6P41182 706 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 GCGRP47871 477 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 HK2P52789 917 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 CBX1P83916 185 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 REEP5Q00765 189 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 RELAQ04206 551 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 NAA25Q14CX7 972 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 HIST2H2ACQ16777 129 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 ST3GAL2Q16842 350 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 TCHHL1Q5QJ38 904 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 C1orf189Q5VU69 101 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 HIST2H2AA3Q6FI13 130 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 MED27Q6P2C8 311 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 VN1R4Q7Z5H5 301 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 WDR75Q8IWA0 830 aaKnown RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 SPACA3Q8IXA5 215 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 NLGN4XQ8N0W4 816 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 KRT78Q8N1N4 520 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 AFAP1L2Q8N4X5 818 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 NLGN4YQ8NFZ3 816 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 PITHD1Q9GZP4 211 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-207ENST00000597136 FAM107BQ9H098 131 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 VTI1BQ9UEU0 232 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 PCDHGA11Q9Y5H2 935 aa14.28□□□□□ -0.12
TRIM28-207ENST00000597136 MANBAO00462 879 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF195O14628 629 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 KRT6AP02538 564 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 KRT6BP04259 564 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 WT1P19544 449 aaPredicted RBP14.27□□□□□ -0.12
TRIM28-207ENST00000597136 F8A1P23610 371 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 RORAP35398 523 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 KRT6CP48668 564 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 FRG2Q64ET8 278 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 TMIGD1Q6UXZ0 262 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 CPLX4Q7Z7G2 160 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 LAS2Q8IYD9 372 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 OR7G3Q8NG95 312 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 TWIST2Q8WVJ9 160 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 UBE2E3Q969T4 207 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 THOC1Q96FV9 657 aaKnown RBP14.27□□□□□ -0.12
TRIM28-207ENST00000597136 FRG2BQ96QU4 278 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 SARGQ9BW04 601 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 TRIM55Q9BYV6 548 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 TUBB1Q9H4B7 451 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 RABEP2Q9H5N1 569 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 NT5DC2Q9H857 520 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 NPHS2Q9NP85 383 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 FARSBQ9NSD9 589 aaKnown RBP14.27□□□□□ -0.12
TRIM28-207ENST00000597136 PADI1Q9ULC6 663 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 SNX6Q9UNH7 406 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 USH1CQ9Y6N9 552 aa14.27□□□□□ -0.12
TRIM28-207ENST00000597136 A0A087WV48 116 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TRBC2A0A5B9 178 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 HYKKA2RU49 373 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MEN1O00255 615 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 OR1F1O43749 312 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CPNE3O75131 537 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ULK1O75385 1050 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CHEK2O96017 543 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 JUNP05412 331 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TROVE2P10155 538 aaKnown RBP eCLIP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ALOX15P16050 662 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ALAS2P22557 587 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 GRK3P35626 688 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 HTR6P50406 440 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 IFT88Q13099 833 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ABRAXAS2Q15018 415 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 PDCD2Q16342 344 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 PRTGQ2VWP7 1150 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 SGO1Q5FBB7 561 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TCTE1Q5JU00 501 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ZNF385CQ66K41 422 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TLDC1Q6P9B6 456 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TTLL10Q6ZVT0 673 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MAVSQ7Z434 540 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TMEM151BQ8IW70 566 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 HOMEZQ8IX15 550 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 DSELQ8IZU8 1212 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 IL22RA1Q8N6P7 574 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ANKRD53Q8N9V6 530 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RFWD2Q8NHY2 731 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 WDR20Q8TBZ3 569 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MTFMTQ96DP5 389 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TM4SF19Q96DZ7 209 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CCT8L2Q96SF2 557 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms