RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SIRT5Q9NXA8 310 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 DLGAP4Q9Y2H0 992 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 HCN4Q9Y3Q4 1203 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 WDR87Q6ZQQ6 2873 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 A8MU76 341 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 PROB1E7EW31 1015 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 TOX3O15405 576 aaPredicted RBP13.97□□□□□ -0.17
VRK3-212ENST00000596814 HCRTR1O43613 425 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 PCDH7O60245 1069 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 CBFA2T3O75081 653 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 UBOX5O94941 541 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 EIF2S1P05198 315 aaKnown RBP13.97□□□□□ -0.17
VRK3-212ENST00000596814 THRAP10827 490 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 PRPS2P11908 318 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 BCKDHAP12694 445 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 SDC1P18827 310 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 ACADVLP49748 655 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 NME5P56597 212 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 RAE1P78406 368 aaKnown RBP13.97□□□□□ -0.17
VRK3-212ENST00000596814 HSD11B2P80365 405 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 GALNT18Q6P9A2 607 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 TRIM40Q6P9F5 258 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 ZNF574Q6ZN55 896 aaPredicted RBP13.97□□□□□ -0.17
VRK3-212ENST00000596814 TREML1Q86YW5 311 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 MCATQ8IVS2 390 aaKnown RBP13.97□□□□□ -0.17
VRK3-212ENST00000596814 CSNK1A1LQ8N752 337 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 OR2L5Q8NG80 312 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 WDR48Q8TAF3 677 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 GAL3ST3Q96A11 431 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 MS4A6EQ96DS6 147 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 NLNQ9BYT8 704 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 KLHL31Q9H511 634 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 PLCL2Q9UPR0 1127 aa13.97□□□□□ -0.17
VRK3-212ENST00000596814 URADA6NGE7 173 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 CAPN14A8MX76 684 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 D6RAR5 112 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 PSMD12O00232 456 aaPredicted RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 RTCAO00442 366 aaKnown RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 NTN3O00634 580 aaPredicted RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 ZSCAN9O15535 394 aaPredicted RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 ERI3O43414 337 aaKnown RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 GDF9O60383 454 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 ANKRD34CP0C6C1 535 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 GPX3P22352 226 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 PIK3R1P27986 724 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 SSR2P43308 183 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 GABRA4P48169 554 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 PLA2G16P53816 162 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 TGM3Q08188 693 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 SPIDRQ14159 915 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 PTGR1Q14914 329 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 KRT72Q14CN4 511 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 HKDC1Q2TB90 917 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 PAGE2Q7Z2X7 111 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 NUDT13Q86X67 352 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 FAM9CQ8IZT9 166 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 D2HGDHQ8N465 521 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 KCT2Q8NC54 265 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 SRFBP1Q8NEF9 429 aaKnown RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 KLHL6Q8WZ60 621 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 N4BP2L2Q92802 583 aaPredicted RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 SLC41A2Q96JW4 573 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 KCNC2Q96PR1 638 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 CDC6Q99741 560 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 C17orf62Q9BQA9 187 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 SORBS1Q9BX66 1292 aaKnown RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 ZNF717Q9BY31 904 aaPredicted RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 ZIM2Q9NZV7 527 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 PDP2Q9P2J9 529 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 MCM8Q9UJA3 840 aa13.96□□□□□ -0.17
VRK3-212ENST00000596814 EP300Q09472 2414 aaPredicted RBP13.96□□□□□ -0.17
VRK3-212ENST00000596814 IGHV5-10-1A0A0J9YXX1 117 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 GNG14A0A1W2PPG7 69 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ERICH4A6NGS2 130 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 SRPX2O60687 465 aaPredicted RBP13.95□□□□□ -0.18
VRK3-212ENST00000596814 KLK1P06870 262 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ANXA4P09525 319 aaPredicted RBP13.95□□□□□ -0.18
VRK3-212ENST00000596814 PCSK2P16519 638 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 NELFEP18615 380 aaKnown RBP13.95□□□□□ -0.18
VRK3-212ENST00000596814 BSGP35613 385 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ARFIP1P53367 373 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 AGKQ53H12 422 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 MANEAQ5SRI9 462 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 TMTC4Q5T4D3 741 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 STPG1Q5TH74 334 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ABHD17CQ6PCB6 329 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 PAOXQ6QHF9 649 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 UBE3DQ7Z6J8 389 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 OR9I1Q8NGQ6 314 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ZCCHC10Q8TBK6 192 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 CCDC74BQ96LY2 380 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 QRFPRQ96P65 431 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 TSSK3Q96PN8 268 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 LHX9Q9NQ69 397 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ADAM29Q9UKF5 820 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 A0A0G2JN53 185 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ARHGAP10A1A4S6 786 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 C4orf51C9J302 202 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 TXNDC9O14530 226 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 GBAP04062 536 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms