RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 KCNA7Q96RP8 456 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 LYSMD1Q96S90 227 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PELOQ9BRX2 385 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 OR8D2Q9GZM6 311 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 EPHX3Q9H6B9 360 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 FBRSL1Q9HCM7 1045 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 NDUFA13Q9P0J0 144 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 SAMD4AQ9UPU9 718 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 PARP14Q460N5 1801 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 A0A1W2PPC4 97 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 ELOVL7A1L3X0 281 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 IDH3BO43837 385 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 DNAJA2O60884 412 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 KRT33AO76009 404 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 RSL1D1O76021 490 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 IGHA2P01877 340 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 MAGP20916 626 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 PDHA2P29803 388 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 PRDX6P30041 224 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 SERPINB10P48595 397 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 CCT3P49368 545 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 ADARP55265 1226 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 KCTD21Q4G0X4 260 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 PLEKHM3Q6ZWE6 761 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 OR52L1Q8NGH7 329 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 OR6Y1Q8NGX8 325 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 ANKRD49Q8WVL7 239 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 ZFRQ96KR1 1074 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 INSM2Q96T92 566 aaPredicted RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 FAM129BQ96TA1 746 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 ZDHHC5Q9C0B5 715 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 Q9N2J8 555 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 SLC22A2O15244 555 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 JUNP05412 331 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 CISD3P0C7P0 127 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 RYKP34925 604 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 FEN1P39748 380 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 VHLP40337 213 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 PIK3CBP42338 1070 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 MAZP56270 477 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 TAS2R41P59536 307 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 DEFB110Q30KQ9 67 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 CATSPEREQ5SY80 951 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 ZNF544Q6NX49 715 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 TNFAIP8L2Q6P589 184 aaPredicted RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 LCTLQ6UWM7 567 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 ZNF574Q6ZN55 896 aaPredicted RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 TRIM69Q86WT6 500 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 AGBL5Q8NDL9 886 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 NACC2Q96BF6 587 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 NSUN5Q96P11 429 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 F2RL3Q96RI0 385 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 C1QTNF2Q9BXJ5 285 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 TBL1XR1Q9BZK7 514 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 RDH14Q9HBH5 336 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 NEUROD4Q9HD90 331 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 MBNL1Q9NR56 388 aaKnown RBP9.46□□□□□ -0.89
LIG3-216ENST00000593099 SRPK3Q9UPE1 567 aa9.46□□□□□ -0.89
LIG3-216ENST00000593099 METTL12A8MUP2 240 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 TYROBPO43914 113 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 NR1D2Q14995 579 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 PLA2G15Q8NCC3 412 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 OR1E3Q8WZA6 343 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 RBCK1Q9BYM8 510 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 CLEC1BQ9P126 229 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 EGFL7Q9UHF1 273 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 CNOT6Q9ULM6 557 aaKnown RBP9.46□□□□□ -0.9
LIG3-216ENST00000593099 FEZF1A0PJY2 475 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 PLRG1O43660 514 aaKnown RBP9.46□□□□□ -0.9
LIG3-216ENST00000593099 CDC40O60508 579 aaKnown RBP eCLIP9.46□□□□□ -0.9
LIG3-216ENST00000593099 ATF4P18848 351 aaPredicted RBP9.46□□□□□ -0.9
LIG3-216ENST00000593099 ECHS1P30084 290 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 GRK6P43250 576 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 DPTQ07507 201 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 ZNF267Q14586 743 aaPredicted RBP9.46□□□□□ -0.9
LIG3-216ENST00000593099 C1orf189Q5VU69 101 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 OR4F3Q6IEY1 312 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 SYVN1Q86TM6 617 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 ROPN1LQ96C74 230 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 RHBDF1Q96CC6 855 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 ACTL8Q9H568 366 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 FGF22Q9HCT0 170 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 ARL8BQ9NVJ2 186 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 ANKMY1Q9P2S6 941 aa9.46□□□□□ -0.9
LIG3-216ENST00000593099 PLXNA1Q9UIW2 1896 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 SLC9B1P1A6NJY1 282 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 BTN3A3O00478 584 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 CLUP10909 449 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 BMP7P18075 431 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 RPL4P36578 427 aaKnown RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 CRISP3P54108 245 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 HENMT1Q5T8I9 393 aaKnown RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 TMEM198Q66K66 360 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 REP15Q6BDI9 236 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 KIAA1211LQ6NV74 962 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 FBXL6Q8N531 539 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 POMGNT2Q8NAT1 580 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 DAZLQ92904 295 aaKnown RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 TMEM125Q96AQ2 219 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 C5orf34Q96MH7 638 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms