RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MFSD12Q6NUT3 480 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 TMPRSS11FQ6ZWK6 438 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 LIMS2Q7Z4I7 341 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 ZNF573Q86YE8 665 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 DDIASQ8IXT1 998 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 MB21D2Q8IYB1 491 aaPredicted RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 SRRM1Q8IYB3 904 aaKnown RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 ADGRF4Q8IZF3 695 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 APCDD1Q8J025 514 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 ARRDC2Q8TBH0 407 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 BRSK1Q8TDC3 778 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 ELP5Q8TE02 316 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 CCDC51Q96ER9 411 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 C14orf79Q96F83 325 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 ATG101Q9BSB4 218 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 TPPP3Q9BW30 176 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 MTMR12Q9C0I1 747 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 RAB33BQ9H082 229 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 AAMDCQ9H7C9 122 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 WDR26Q9H7D7 661 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 DNAJC4Q9NNZ3 241 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 KCNMB3Q9NPA1 279 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 ZCCHC3Q9NUD5 404 aaKnown RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 CLIP2Q9UDT6 1046 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 UTS2RQ9UKP6 389 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 TTC7AQ9ULT0 858 aaPredicted RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 LAMP3Q9UQV4 416 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 SQORQ9Y6N5 450 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 NOTCH1P46531 2555 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 A0A087WZY1 265 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 A0A1B0GWJ7 208 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 KCNU1A8MYU2 1149 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 MAGEB2O15479 319 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 NDUFB4O95168 129 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 KRT6BP04259 564 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 CSN3P07498 182 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 GLRA2P23416 452 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 TMOD1P28289 359 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 PKLRP30613 574 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 CASQ1P31415 396 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 GRIA3P42263 894 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 KRT6CP48668 564 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 MFAP3P55082 362 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 GIT2Q14161 759 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 USH1GQ495M9 461 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 MCMDC2Q4G0Z9 681 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 TIGD2Q4W5G0 525 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 LACTB2Q53H82 288 aaPredicted RBP5.47□□□□□ -1.53
VPS53-219ENST00000576019 CYP4A22Q5TCH4 519 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 PRAMEF7Q5VXH5 474 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 ZYG11AQ6WRX3 759 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 CDH26Q8IXH8 852 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 VANGL1Q8TAA9 524 aaPredicted RBP5.47□□□□□ -1.53
VPS53-219ENST00000576019 GPT2Q8TD30 523 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 SLC25A43Q8WUT9 341 aaPredicted RBP5.47□□□□□ -1.53
VPS53-219ENST00000576019 FAM81BQ96LP2 452 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 DDX50Q9BQ39 737 aaKnown RBP5.47□□□□□ -1.53
VPS53-219ENST00000576019 FAM213AQ9BRX8 229 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 NAPBQ9H115 298 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 SNX25Q9H3E2 840 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 CUEDC2Q9H467 287 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 ECT2Q9H8V3 914 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 GORASP2Q9H8Y8 452 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 TM9SF3Q9HD45 589 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 PNRC2Q9NPJ4 139 aaKnown RBP5.47□□□□□ -1.53
VPS53-219ENST00000576019 SMPD3Q9NY59 655 aaPredicted RBP5.47□□□□□ -1.53
VPS53-219ENST00000576019 ACSL5Q9ULC5 683 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 C2CD2Q9Y426 696 aa5.47□□□□□ -1.53
VPS53-219ENST00000576019 MYH2Q9UKX2 1941 aa5.46□□□□□ -1.53
VPS53-219ENST00000576019 MACROD2A1Z1Q3 448 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 C2orf81A6NN90 581 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 HIDE1A8MVS5 230 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 CLDN3O15551 220 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 OR10H2O60403 315 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 SPAG6O75602 509 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 RAD51DO75771 328 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 JUNBP17275 347 aaPredicted RBP5.46□□□□□ -1.54
VPS53-219ENST00000576019 PIK3R1P27986 724 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TNFSF8P32971 234 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ATP5OP48047 213 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ME1P48163 572 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ALDH7A1P49419 539 aaKnown RBP5.46□□□□□ -1.54
VPS53-219ENST00000576019 CD81P60033 236 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 NEDD9Q14511 834 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 SYT16Q17RD7 645 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ATAD3BQ5T9A4 648 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 NCAPH2Q6IBW4 605 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TMEM71Q6P5X7 295 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 BTNL8Q6UX41 500 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 Q6ZNX1 250 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ZNF534Q76KX8 674 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 PHLDB2Q86SQ0 1253 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TMPRSS11BQ86T26 416 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ASPGQ86U10 573 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ZC3HC1Q86WB0 502 aaKnown RBP5.46□□□□□ -1.54
VPS53-219ENST00000576019 C1orf87Q8N0U7 546 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 BEST3Q8N1M1 668 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 EMC1Q8N766 993 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 C8orf58Q8NAV2 365 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 SYT8Q8NBV8 401 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms