RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 EPHA5P54756 1037 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 CASP9P55211 416 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 NCS1P62166 190 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 RELAQ04206 551 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 UBE2UQ5VVX9 321 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 GPR153Q6NV75 609 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 FBXO15Q8NCQ5 510 aaPredicted RBP21.88■■□□□ 1.09
VPS53-211ENST00000571805 SPPL2AQ8TCT8 520 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 S100ZQ8WXG8 99 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 FEVQ99581 238 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 FBXO8Q9NRD0 319 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 DOLKQ9UPQ8 538 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 ITM2BQ9Y287 266 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 ZNF451Q9Y4E5 1061 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 TESMINQ9Y4I5 508 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 H3BM21 787 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 KLHL18O94889 574 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 ELFN1P0C7U0 828 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 HLA-EP13747 358 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 TNFRSF1BP20333 461 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 NNMTP40261 264 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 RXRGP48443 463 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 PXNP49023 591 aaPredicted RBP21.88■■□□□ 1.09
VPS53-211ENST00000571805 PNLIPRP1P54315 467 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 TBPL1P62380 186 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 CSNK2BP67870 215 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 ZNF763Q0D2J5 394 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 COMMD6Q7Z4G1 85 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 MFSD4AQ8N468 514 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 REPS1Q96D71 796 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 ALPK1Q96QP1 1244 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 PRM3Q9NNZ6 103 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 SH3GLB1Q9Y371 365 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 TNFRSF11BO00300 401 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 FOXE1O00358 373 aaPredicted RBP21.87■■□□□ 1.09
VPS53-211ENST00000571805 OPN1SWP03999 348 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 GBAP04062 536 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 ITGB8P26012 769 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 DDX6P26196 483 aaKnown RBP eCLIP21.87■■□□□ 1.09
VPS53-211ENST00000571805 FADDQ13158 208 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 ZNF77Q15935 545 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 CYP2A13Q16696 494 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 LMNTD1Q8N9Z9 388 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 OR4C15Q8NGM1 316 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 RPL3LQ92901 407 aaKnown RBP21.87■■□□□ 1.09
VPS53-211ENST00000571805 CHCHD3Q9NX63 227 aaKnown RBP21.87■■□□□ 1.09
VPS53-211ENST00000571805 HCFC2Q9Y5Z7 792 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 WNT6Q9Y6F9 365 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 PRAMEF25A6NGN4 478 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 C6orf47O95873 294 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 CCL5P13501 91 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 GGT2P36268 569 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 CCR3P51677 355 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 MC1RQ01726 317 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 PPIGQ13427 754 aaKnown RBP eCLIP21.87■■□□□ 1.094e-7■■□□□ 12.2
VPS53-211ENST00000571805 OXA1LQ15070 435 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 MPEG1Q2M385 716 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 TMEM236Q5W0B7 351 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 LAS2Q8IYD9 372 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 SYTL1Q8IYJ3 562 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 SLC5A8Q8N695 610 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 KLHL23Q8NBE8 558 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 OR6Q1Q8NGQ2 317 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 HCAR2Q8TDS4 363 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 PHF10Q8WUB8 498 aaKnown RBP21.87■■□□□ 1.09
VPS53-211ENST00000571805 LGALS12Q96DT0 336 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 MROQ9BYG7 248 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 EPHX3Q9H6B9 360 aa21.87■■□□□ 1.09
VPS53-211ENST00000571805 ZNF197O14709 1029 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 ADAMDEC1O15204 470 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 RFPL2O75678 378 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 FURINP09958 794 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 CSF2RAP15509 400 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 PDE7AQ13946 482 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 SLBPQ14493 270 aaKnown RBP eCLIP21.86■■□□□ 1.09
VPS53-211ENST00000571805 PARS2Q7L3T8 475 aaKnown RBP21.86■■□□□ 1.09
VPS53-211ENST00000571805 NRSN1Q8IZ57 195 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 ZNF366Q8N895 744 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 OR52N2Q8NGI0 321 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 TAMM41Q96BW9 452 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 LRIG1Q96JA1 1093 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 SLC35A5Q9BS91 424 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 PLCXD1Q9NUJ7 323 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 TBC1D14Q9P2M4 693 aa21.86■■□□□ 1.09
VPS53-211ENST00000571805 MKI67P46013 3256 aaKnown RBP21.86■■□□□ 1.09
VPS53-211ENST00000571805 MTCL1Q9Y4B5 1905 aaKnown RBP21.86■■□□□ 1.09
VPS53-211ENST00000571805 CLDN24A6NM45 220 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 LILRB5O75023 590 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 C1GALT1C1LP0DN25 315 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 CD36P16671 472 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 WEE1P30291 646 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 GRK3P35626 688 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 IFITM3Q01628 133 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 MLIPQ5VWP3 458 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 ANGPTL8Q6UXH0 198 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 VN1R2Q8NFZ6 395 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 WDR48Q8TAF3 677 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 CIDECQ96AQ7 238 aaPredicted RBP21.85■■□□□ 1.09
VPS53-211ENST00000571805 SGPP1Q9BX95 441 aa21.85■■□□□ 1.09
VPS53-211ENST00000571805 DMRT3Q9NQL9 472 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms