RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TAGLN2P37802 199 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 OPRL1P41146 370 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 EIF2DP41214 584 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 MAGEA4P43358 317 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ALDH9A1P49189 494 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CPT1AP50416 773 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ARSFP54793 590 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SLC12A3P55017 1021 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 LOXL3P58215 753 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TAS2R40P59535 323 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 YWHAZP63104 245 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 TXNL4AP83876 142 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 ARHGAP8P85298 464 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DEFA6Q01524 100 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GNA12Q03113 381 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 HSF2Q03933 536 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RGS1Q08116 209 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ILF3Q12906 894 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS35-208ENST00000568612 TRAF2Q12933 501 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PPIL2Q13356 520 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 KRR1Q13601 381 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 PEX6Q13608 980 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CAMK1Q14012 370 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 EFR3AQ14156 821 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 KCNJ11Q14654 390 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 STARD3Q14849 445 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 EMC2Q15006 297 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 IRF4Q15306 451 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 LLGL1Q15334 1064 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TRIP10Q15642 601 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MEA1Q16626 185 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CA9Q16790 459 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DUSP6Q16828 381 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 AP5B1Q2VPB7 878 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GFOD2Q3B7J2 385 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GPR33Q49SQ1 333 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 HSD17B12Q53GQ0 312 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SGO1Q5FBB7 561 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ARMCX4Q5H9R4 360 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PAGE2BQ5JRK9 111 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TOR1AIP1Q5JTV8 583 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TEDDM1Q5T9Z0 273 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 LIPJQ5W064 366 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 KRT39Q6A163 491 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SFRP4Q6FHJ7 346 aaPredicted RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 OR5M10Q6IEU7 315 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SULT1C3Q6IMI6 304 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RGS7BPQ6MZT1 257 aaPredicted RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 SLC27A4Q6P1M0 643 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TTC27Q6P3X3 843 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 B3GNT9Q6UX72 402 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NPNTQ6UXI9 565 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SLC36A4Q6YBV0 504 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZNF783Q6ZMS7 281 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DPY19L3Q6ZPD9 716 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TOM1L2Q6ZVM7 507 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RRM2BQ7LG56 351 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 OTOAQ7RTW8 1153 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 OVCH2Q7RTZ1 564 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 APTXQ7Z2E3 356 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 R3HCC1LQ7Z5L2 792 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 SNX20Q7Z614 316 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DPPA2Q7Z7J5 298 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GALNT10Q86SR1 603 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 METTL23Q86XA0 190 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 FAM131BQ86XD5 332 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MICU3Q86XE3 530 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PHC2Q8IXK0 858 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ENTHD1Q8IYW4 607 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DNAJC5GQ8N7S2 189 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS35-208ENST00000568612 OR13C3Q8NGS6 347 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 OR6X1Q8NH79 312 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 AKR7LQ8NHP1 331 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZNF671Q8TAW3 534 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 UBA3Q8TBC4 463 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NANPQ8TBE9 248 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DTD1Q8TEA8 209 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 IP6K1Q92551 441 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ELMO1Q92556 727 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 STAMQ92783 540 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TNFRSF14Q92956 283 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SNAPC3Q92966 411 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZHX1-C8orf76Q96EF9 292 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SGTBQ96EQ0 304 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZBED3Q96IU2 234 aaPredicted RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 SERAC1Q96JX3 654 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 LURAP1Q96LR2 239 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CNBD2Q96M20 576 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RILPQ96NA2 401 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CASD1Q96PB1 797 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 QKIQ96PU8 341 aaKnown RBP eCLIP3.14□□□□□ -1.916e-6■■■■□ 20.5
VPS35-208ENST00000568612 PANX3Q96QZ0 392 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CAMKK2Q96RR4 588 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 C2orf88Q9BSF0 95 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NPLQ9BXD5 320 aaPredicted RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 ADGRE3Q9BY15 652 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 B3GNT5Q9BYG0 378 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TRIM54Q9BYV2 358 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms