RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PAFAH2Q99487 392 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 MFRPQ9BY79 579 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 CD244Q9BZW8 370 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 SLC6A16Q9GZN6 736 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 VN1R1Q9GZP7 353 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 ZBTB20Q9HC78 741 aaPredicted RBP14.21□□□□□ -0.13
VPS39-210ENST00000568357 ZNF160Q9HCG1 818 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 GPRC5BQ9NZH0 403 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 NUDT4Q9NZJ9 180 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 ZNF490Q9ULM2 529 aaPredicted RBP14.21□□□□□ -0.13
VPS39-210ENST00000568357 G3BP2Q9UN86 482 aaKnown RBP14.21□□□□□ -0.13
VPS39-210ENST00000568357 MDC1Q14676 2089 aaKnown RBP14.21□□□□□ -0.14
VPS39-210ENST00000568357 SUPT3HB4E1H0 165 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 POC1B-GALNT4F8VUJ3 575 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 CCNT2O60583 730 aaKnown RBP14.2□□□□□ -0.14
VPS39-210ENST00000568357 SUPT3HO75486 399 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 KLHL2O95198 593 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 HPP00738 406 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 S100BP04271 92 aaPredicted RBP14.2□□□□□ -0.14
VPS39-210ENST00000568357 SERPINA6P08185 405 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 INHBAP08476 426 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 ZNF888P0CJ79 500 aaPredicted RBP14.2□□□□□ -0.14
VPS39-210ENST00000568357 SMIM10L1P0DMW3 83 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 COX6A1P12074 109 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 CD22P20273 847 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 CXCR2P25025 360 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 MSH2P43246 934 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 CD97P48960 835 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 SERPINB8P50452 374 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 MLLT10P55197 1068 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 RAB8AP61006 207 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 OLR1P78380 273 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 EEF1A2Q05639 463 aaKnown RBP14.2□□□□□ -0.14
VPS39-210ENST00000568357 DOC2AQ14183 400 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 PDK4Q16654 411 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 FAM83EQ2M2I3 478 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 VWA5B1Q5TIE3 1220 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 TMEM205Q6UW68 189 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 NDUFAF7Q7L592 441 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 CCDC91Q7Z6B0 441 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.2□□□□□ -0.14
VPS39-210ENST00000568357 PLD6Q8N2A8 252 aaKnown RBP14.2□□□□□ -0.14
VPS39-210ENST00000568357 TRPV3Q8NET8 790 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 RHEBL1Q8TAI7 183 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 DCAKDQ8WVC6 231 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 SMIM10Q96HG1 83 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 VPS11Q9H270 941 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 EHD1Q9H4M9 534 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 NT5DC2Q9H857 520 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 ZNF358Q9NW07 568 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 C5AR2Q9P296 337 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 COPG2Q9UBF2 871 aa14.2□□□□□ -0.14
VPS39-210ENST00000568357 NOTCH2Q04721 2471 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 A0A087WUV0 522 aaPredicted RBP14.19□□□□□ -0.14
VPS39-210ENST00000568357 LOC102723996A0A087X1L8 192 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 IGHV1-45A0A0A0MS14 117 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 A0A1W2PQ72 361 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 ENO4A6NNW6 628 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 C4orf51C9J302 202 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 CLGNO14967 610 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 CHST10O43529 356 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 DPM1O60762 260 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 TBX6O95947 436 aaPredicted RBP14.19□□□□□ -0.14
VPS39-210ENST00000568357 MAGEA12P43365 314 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 ACAP2Q15057 778 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 MINDY4Q4G0A6 757 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 XKR6Q5GH73 641 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 ADNP2Q6IQ32 1131 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 JMJD6Q6NYC1 403 aaPredicted RBP14.19□□□□□ -0.14
VPS39-210ENST00000568357 IGFL3Q6UXB1 125 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 ABHD13Q7L211 337 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 VN1R5Q7Z5H4 357 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 FAM26EQ8N5C1 309 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 ISL2Q96A47 359 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 WDR34Q96EX3 536 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 PEX11GQ96HA9 241 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 THOC3Q96J01 351 aaKnown RBP14.19□□□□□ -0.14
VPS39-210ENST00000568357 VPS50Q96JG6 964 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 TXLNGYQ9BZA5 131 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 L2HGDHQ9H9P8 463 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 LANCL2Q9NS86 450 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 IKBKGQ9Y6K9 419 aa14.19□□□□□ -0.14
VPS39-210ENST00000568357 NSG1A0A0A6YYJ2 146 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 IGHV3-20A0A0C4DH32 117 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 LRIT2A6NDA9 550 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 WFS1O76024 890 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 ALPPP05187 535 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 C8orf89P0DMQ9 161 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 GCAP28676 217 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 SERPINB9P50453 376 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 CHIT1Q13231 466 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 PCOLCEQ15113 449 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 PFKFB4Q16877 469 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 TOR1AIP1Q5JTV8 583 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 MFSD4BQ5TF39 518 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 LANCL3Q6ZV70 420 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 TRMT10CQ7L0Y3 403 aaKnown RBP14.18□□□□□ -0.14
VPS39-210ENST00000568357 LRRC70Q7Z2Q7 622 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 HPS6Q86YV9 775 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 KRT78Q8N1N4 520 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms