RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SLC18A3Q16572 532 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 PTRHD1Q6GMV3 140 aaKnown RBP10.93□□□□□ -0.66
CLK3-222ENST00000568232 HMBOX1Q6NT76 420 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 AFTPHQ6ULP2 937 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 BBS12Q6ZW61 710 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 YTHDF3Q7Z739 585 aaKnown RBP10.93□□□□□ -0.66
CLK3-222ENST00000568232 ARMC10Q8N2F6 343 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 TMEM251Q8N6I4 163 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 PSD4Q8NDX1 1056 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 OR6P1Q8NGX9 317 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 ACTL9Q8TC94 416 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 MAGEC3Q8TD91 643 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 FOPNLQ96NB1 174 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 PKP4Q99569 1192 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 LIN28AQ9H9Z2 209 aaKnown RBP10.93□□□□□ -0.66
CLK3-222ENST00000568232 ANKHQ9HCJ1 492 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 TIMMDC1Q9NPL8 285 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 UTP6Q9NYH9 597 aaKnown RBP10.93□□□□□ -0.66
CLK3-222ENST00000568232 MARCH4Q9P2E8 410 aaPredicted RBP10.93□□□□□ -0.66
CLK3-222ENST00000568232 CAPN11Q9UMQ6 739 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 ERVK-11Q9UQG0 969 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 MRFAP1Q9Y605 127 aa10.93□□□□□ -0.66
CLK3-222ENST00000568232 TRBV11-1A0A0K0K1C0 115 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 ATP6AP2A0A1C7CYW4 349 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 MACROD2A1Z1Q3 448 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 SAGE2PA6NJ88 616 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 KDM4EB2RXH2 506 aaPredicted RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 ACOT7O00154 380 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 AQP7O14520 342 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 SMPD2O60906 423 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 ATP6AP2O75787 350 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 STK10O94804 968 aaKnown RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 GLSO94925 669 aaPredicted RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 MATN4O95460 622 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 B3GALT4O96024 378 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 FHP07954 510 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 RBP3P10745 1247 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 PNLIPRP1P54315 467 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 EIF3EP60228 445 aaKnown RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 OLR1P78380 273 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 ANKRD20A4Q4UJ75 823 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 FASTKD1Q53R41 847 aaKnown RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 WLSQ5T9L3 541 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 CCDC181Q5TID7 509 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 DARS2Q6PI48 645 aaKnown RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 POMZP3Q6PJE2 187 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 CAPN12Q6ZSI9 719 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 OTOAQ7RTW8 1153 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 SLC22A16Q86VW1 577 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 SLC13A5Q86YT5 568 aaPredicted RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 CDKL3Q8IVW4 592 aaPredicted RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 RCOR2Q8IZ40 523 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 APCDD1LQ8NCL9 501 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 TNIP2Q8NFZ5 429 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 SREK1Q8WXA9 508 aaKnown RBP10.92□□□□□ -0.66
CLK3-222ENST00000568232 FAM136AQ96C01 138 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 LRRC45Q96CN5 670 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 CAPZA3Q96KX2 299 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 PTCHD1Q96NR3 888 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 OR1F2PQ96R84 312 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 FERMT1Q9BQL6 677 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 YIPF4Q9BSR8 244 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 P2RY12Q9H244 342 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 FBXW2Q9UKT8 454 aa10.92□□□□□ -0.66
CLK3-222ENST00000568232 DNAJC13O75165 2243 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 HSPB2A8KAH6 182 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 FAM47E-STBD1D6RA91 191 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 E7ENX8 843 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 DVL2O14641 736 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 PRMT5O14744 637 aaPredicted RBP10.91□□□□□ -0.66
CLK3-222ENST00000568232 PSTPIP1O43586 416 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 CCNDBP1O95273 360 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 SLC16A8O95907 504 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 SERPINC1P01008 464 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 ENDOUP21128 410 aaKnown RBP10.91□□□□□ -0.66
CLK3-222ENST00000568232 MAOAP21397 527 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 CTNNA2P26232 953 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 MAN2A2P49641 1150 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 TAP2Q03519 686 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 HSPB2Q16082 182 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 ASTE1Q2TB18 679 aaPredicted RBP10.91□□□□□ -0.66
CLK3-222ENST00000568232 FBXL19-AS1Q494R0 122 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 XKR6Q5GH73 641 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 IL20RBQ6UXL0 311 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 RGS9BPQ6ZS82 235 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 KIAA0408Q6ZU52 694 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 SLC26A11Q86WA9 606 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 KATNAL2Q8IYT4 538 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 LRRC75A-AS1Q8N1F1 130 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 OR52K1Q8NGK4 314 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 ZNF480Q8WV37 535 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 TBC1D20Q96BZ9 403 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 TM4SF19Q96DZ7 209 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 PPP1R2P1Q96PQ5 205 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 LDAHQ9H6V9 325 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 LRRC40Q9H9A6 602 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 SPRR3Q9UBC9 169 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 ZNF223Q9UK11 482 aaPredicted RBP10.91□□□□□ -0.66
CLK3-222ENST00000568232 SCN3AQ9NY46 2000 aa10.91□□□□□ -0.66
CLK3-222ENST00000568232 A8MVJ9 347 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 855.4 ms