RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CTAGE15A4D2H0 777 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 TTI1O43156 1089 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 HNRNPRO43390 633 aaKnown RBP15.1■□□□□ 0.01
CLN3-229ENST00000567963 ZNF37AP17032 561 aaPredicted RBP15.1■□□□□ 0.01
CLN3-229ENST00000567963 JAK1P23458 1154 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 CA7P43166 264 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 SLC26A5P58743 744 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 DR1Q01658 176 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 RBPJQ06330 500 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 OR1C1Q15619 314 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 CTAGE6Q86UF2 777 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 THOC6Q86W42 341 aaKnown RBP15.1■□□□□ 0.01
CLN3-229ENST00000567963 CREG2Q8IUH2 290 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 KLHL7Q8IXQ5 586 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 SLC5A8Q8N695 610 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 ANKRD53Q8N9V6 530 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 ELP5Q8TE02 316 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 ANKRD7Q92527 254 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 MARVELD3Q96A59 401 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 SCMH1Q96GD3 660 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 CCDC120Q96HB5 630 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 TSNARE1Q96NA8 513 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 KCNF1Q9H3M0 494 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 ZFATQ9P243 1243 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 SLC22A14Q9Y267 594 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 PSAT1Q9Y617 370 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 MYO9AB2RTY4 2548 aa15.1■□□□□ 0.01
CLN3-229ENST00000567963 URADA6NGE7 173 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 GABRR3A8MPY1 467 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 PRSS44E7EML9 344 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 CCL21O00585 134 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 TP73O15350 636 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 B4GALT2O60909 372 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 SMIM10L1P0DMW3 83 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 SAT1P21673 171 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 ITGA8P53708 1063 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 ARL4CP56559 192 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 TAS2R50P59544 299 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 HYAL2Q12891 473 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 NXPE4Q6UWF7 544 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 QSOX2Q6ZRP7 698 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 ZC3HC1Q86WB0 502 aaKnown RBP15.09■□□□□ 0.01
CLN3-229ENST00000567963 ANKMY2Q8IV38 441 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 NKAPQ8N5F7 415 aaKnown RBP15.09■□□□□ 0.01
CLN3-229ENST00000567963 TRPV3Q8NET8 790 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 ITLN2Q8WWU7 325 aaPredicted RBP15.09■□□□□ 0.01
CLN3-229ENST00000567963 SMIM10Q96HG1 83 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 CAPZA3Q96KX2 299 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 RUNDC3BQ96NL0 473 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 PTCHD1Q96NR3 888 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 AIF1LQ9BQI0 150 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 HES7Q9BYE0 225 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 SLC6A16Q9GZN6 736 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 CDCP1Q9H5V8 836 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 PELI2Q9HAT8 420 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 CLK4Q9HAZ1 481 aaKnown RBP15.09■□□□□ 0.01
CLN3-229ENST00000567963 KLHL1Q9NR64 748 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 SUCOQ9UBS9 1254 aaKnown RBP15.09■□□□□ 0.01
CLN3-229ENST00000567963 DYRK1BQ9Y463 629 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 KCNE2Q9Y6J6 123 aa15.09■□□□□ 0.01
CLN3-229ENST00000567963 ARHGAP10A1A4S6 786 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 ASPDHA6ND91 283 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 ENO4A6NNW6 628 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 CDC7O00311 574 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 CDK2AP1O14519 115 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 PRMT3O60678 531 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 SEC31AO94979 1220 aaKnown RBP15.08■□□□□ 0.01
CLN3-229ENST00000567963 CD46P15529 392 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 EEF1DP29692 281 aaKnown RBP15.08■□□□□ 0.01
CLN3-229ENST00000567963 HNF4AP41235 474 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 RAB8AP61006 207 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 BTG2P78543 158 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 CDKL1Q00532 357 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 REEP5Q00765 189 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 MGAT5Q09328 741 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 ART3Q13508 389 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 RPS19BP1Q86WX3 136 aaKnown RBP15.08■□□□□ 0.01
CLN3-229ENST00000567963 LGI4Q8N135 537 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 HORMAD2Q8N7B1 307 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 TRIM51Q9BSJ1 452 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 KLHL31Q9H511 634 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 MOCS1Q9NZB8 636 aa15.08■□□□□ 0.01
CLN3-229ENST00000567963 KLF2Q9Y5W3 355 aaPredicted RBP15.08■□□□□ 0.01
CLN3-229ENST00000567963 FAM95CA0A1B0GW59 222 aa15.08■□□□□ 0
CLN3-229ENST00000567963 NPEPPSL1A6NEC2 478 aa15.08■□□□□ 0
CLN3-229ENST00000567963 NDC80O14777 642 aa15.08■□□□□ 0
CLN3-229ENST00000567963 SLC19A2O60779 497 aa15.08■□□□□ 0
CLN3-229ENST00000567963 NEURL1O76050 574 aa15.08■□□□□ 0
CLN3-229ENST00000567963 SERPINA6P08185 405 aa15.08■□□□□ 0
CLN3-229ENST00000567963 PRF1P14222 555 aa15.08■□□□□ 0
CLN3-229ENST00000567963 HNMTP50135 292 aa15.08■□□□□ 0
CLN3-229ENST00000567963 OC90Q02509 493 aaPredicted RBP15.08■□□□□ 0
CLN3-229ENST00000567963 ZNF460Q14592 562 aa15.08■□□□□ 0
CLN3-229ENST00000567963 RBBP5Q15291 538 aaKnown RBP15.08■□□□□ 0
CLN3-229ENST00000567963 KRTCAP3Q53RY4 240 aa15.08■□□□□ 0
CLN3-229ENST00000567963 MTFR2Q6P444 385 aa15.08■□□□□ 0
CLN3-229ENST00000567963 MRGPRGQ86SM5 289 aa15.08■□□□□ 0
CLN3-229ENST00000567963 TMPRSS11BQ86T26 416 aa15.08■□□□□ 0
CLN3-229ENST00000567963 KIF2BQ8N4N8 673 aa15.08■□□□□ 0
CLN3-229ENST00000567963 TMEM178AQ8NBL3 297 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms