RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 SNX3O60493 162 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 GUCA1CO95843 209 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 PRB1P04280 392 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 FURINP09958 794 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 KCNC1P48547 511 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 RRADP55042 308 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 PCBP2Q15366 365 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLK3-218ENST00000566926 NDUFA9Q16795 377 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 PRTGQ2VWP7 1150 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 ZNF678Q5SXM1 525 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 MRPL14Q6P1L8 145 aaKnown RBP12.79□□□□□ -0.36
CLK3-218ENST00000566926 MBOAT1Q6ZNC8 495 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 ZCCHC23Q6ZST2 131 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 FRMD7Q6ZUT3 714 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 OVCH1Q7RTY7 1134 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 SPATA21Q7Z572 469 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 PIGWQ7Z7B1 504 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 SPNS2Q8IVW8 549 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 OR4N4Q8N0Y3 316 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 ZNF843Q8N446 348 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 CSNK1A1LQ8N752 337 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 CCNYL1Q8N7R7 359 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 OR2Y1Q8NGV0 311 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 OR56A3Q8NH54 315 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 ZNF473Q8WTR7 871 aaKnown RBP12.79□□□□□ -0.36
CLK3-218ENST00000566926 STON2Q8WXE9 905 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 EXT2Q93063 718 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 NACC2Q96BF6 587 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 VPS50Q96JG6 964 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 PRAP1Q96NZ9 151 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 TMEM237Q96Q45 408 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 OR2A5Q96R48 311 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 EGFL8Q99944 293 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 FAM107BQ9H098 131 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 WDR54Q9H977 334 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 ZNF304Q9HCX3 659 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 SLCO1B3Q9NPD5 702 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 STARD5Q9NSY2 213 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 CUEDC1Q9NWM3 386 aaPredicted RBP12.79□□□□□ -0.36
CLK3-218ENST00000566926 NXT1Q9UKK6 140 aaKnown RBP12.79□□□□□ -0.36
CLK3-218ENST00000566926 PTRH2Q9Y3E5 179 aaKnown RBP12.79□□□□□ -0.36
CLK3-218ENST00000566926 RAP2CQ9Y3L5 183 aa12.79□□□□□ -0.36
CLK3-218ENST00000566926 KCNE1BA0A087WTH5 132 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 HAT1O14929 419 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 KLF7O75840 302 aaPredicted RBP12.78□□□□□ -0.36
CLK3-218ENST00000566926 RPS17P08708 135 aaKnown RBP12.78□□□□□ -0.36
CLK3-218ENST00000566926 NPPBP16860 134 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 ITGAXP20702 1163 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 GGT5P36269 586 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 LCP2Q13094 533 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 IL10RAQ13651 578 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 MED25Q71SY5 747 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 TMEM102Q8N9M5 508 aaPredicted RBP12.78□□□□□ -0.36
CLK3-218ENST00000566926 CCDC197Q8NCU1 140 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 C9orf43Q8TAL5 461 aaPredicted RBP12.78□□□□□ -0.36
CLK3-218ENST00000566926 ADAMTS17Q8TE56 1095 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 PHF21BQ96EK2 531 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 SEMA4CQ9C0C4 833 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 SLC26A1Q9H2B4 701 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 ACSS2Q9NR19 701 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 VTI1BQ9UEU0 232 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 G3BP2Q9UN86 482 aaKnown RBP12.78□□□□□ -0.36
CLK3-218ENST00000566926 DYRK1BQ9Y463 629 aa12.78□□□□□ -0.36
CLK3-218ENST00000566926 HEMK1Q9Y5R4 338 aaPredicted RBP12.78□□□□□ -0.36
CLK3-218ENST00000566926 DOCK10Q96BY6 2186 aa12.77□□□□□ -0.36
CLK3-218ENST00000566926 B8ZZF3 427 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 PEX12O00623 359 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 NRP2O60462 931 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 C1QL1O75973 258 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 SUPT7LO94864 414 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 CCR8P51685 355 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 CSNK1G2P78368 415 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 OCA2Q04671 838 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 FAM53BQ14153 422 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 SLC9A5Q14940 896 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 ARL13AQ5H913 290 aaPredicted RBP12.77□□□□□ -0.37
CLK3-218ENST00000566926 LRRC70Q7Z2Q7 622 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 CAMKVQ8NCB2 501 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 ABHD11Q8NFV4 315 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 COL26A1Q96A83 441 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 PYCR2Q96C36 320 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 RHBDF1Q96CC6 855 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 MAGEB10Q96LZ2 347 aaPredicted RBP12.77□□□□□ -0.37
CLK3-218ENST00000566926 FER1L6-AS2Q96M78 137 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 ELAC2Q9BQ52 826 aaKnown RBP12.77□□□□□ -0.37
CLK3-218ENST00000566926 PFDN4Q9NQP4 134 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 WWOXQ9NZC7 414 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 PTBP2Q9UKA9 531 aaKnown RBP12.77□□□□□ -0.37
CLK3-218ENST00000566926 IKZF3Q9UKT9 509 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 RUVBL1Q9Y265 456 aaKnown RBP12.77□□□□□ -0.37
CLK3-218ENST00000566926 ARL2BPQ9Y2Y0 163 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 KCNE2Q9Y6J6 123 aa12.77□□□□□ -0.37
CLK3-218ENST00000566926 KALRNO60229 2985 aa12.76□□□□□ -0.37
CLK3-218ENST00000566926 SCN2AQ99250 2005 aa12.76□□□□□ -0.37
CLK3-218ENST00000566926 FASNP49327 2511 aaKnown RBP12.76□□□□□ -0.37
CLK3-218ENST00000566926 ARGFXA6NJG6 315 aa12.76□□□□□ -0.37
CLK3-218ENST00000566926 KLHL41O60662 606 aa12.76□□□□□ -0.37
CLK3-218ENST00000566926 ATXN8OSP0DMR3 200 aa12.76□□□□□ -0.37
CLK3-218ENST00000566926 CDH1P12830 882 aa12.76□□□□□ -0.37
CLK3-218ENST00000566926 FBLP22087 321 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms