RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ABHD17BQ5VST6 288 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 PPM1NQ8N819 430 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 PLPP5Q8NEB5 264 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 GRHL3Q8TE85 626 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 UTP15Q8TED0 518 aaKnown RBP19.55■□□□□ 0.72
CLN3-219ENST00000565778 MAGEB10Q96LZ2 347 aaPredicted RBP19.55■□□□□ 0.72
CLN3-219ENST00000565778 OR1F2PQ96R84 312 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 GPR22Q99680 433 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 BARD1Q99728 777 aaKnown RBP19.55■□□□□ 0.72
CLN3-219ENST00000565778 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.55■□□□□ 0.72
CLN3-219ENST00000565778 TEKT2Q9UIF3 430 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 PRRC2CQ9Y520 2896 aaKnown RBP19.55■□□□□ 0.72
CLN3-219ENST00000565778 SHANK1Q9Y566 2161 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 ATP6V0D1P61421 351 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 SLC7A5Q01650 507 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 ABRAXAS2Q15018 415 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 KBTBD12Q3ZCT8 623 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 PLAG1Q6DJT9 500 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 FBF1Q8TES7 1133 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 SSC4DQ8WTU2 575 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 TBC1D20Q96BZ9 403 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 CAPS2Q9BXY5 557 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 KLHL31Q9H511 634 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 WWOXQ9NZC7 414 aa19.54■□□□□ 0.72
CLN3-219ENST00000565778 CTAGE15A4D2H0 777 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 CYSRT1A8MQ03 144 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 B4GALT2O60909 372 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 FAM155BO75949 473 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 WISP3O95389 354 aaPredicted RBP19.53■□□□□ 0.72
CLN3-219ENST00000565778 WDPCPO95876 746 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 FHP07954 510 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 GP1BBP13224 206 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 CD1DP15813 335 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 SLC6A12P48065 614 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 RAB10P61026 200 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 RHAGQ02094 409 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 CKAP4Q07065 602 aaKnown RBP19.53■□□□□ 0.72
CLN3-219ENST00000565778 SFT2D3Q587I9 215 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 TOR1AIP1Q5JTV8 583 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 RPUSD3Q6P087 351 aaKnown RBP19.53■□□□□ 0.72
CLN3-219ENST00000565778 ZDHHC24Q6UX98 284 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 SLCO4C1Q6ZQN7 724 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 RAPH1Q70E73 1250 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 ZNF572Q7Z3I7 529 aaPredicted RBP19.53■□□□□ 0.72
CLN3-219ENST00000565778 CTAGE6Q86UF2 777 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 TCAIMQ8N3R3 496 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 FAR1Q8WVX9 515 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 PHACTR1Q9C0D0 580 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 SLC6A16Q9GZN6 736 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 CNOT10Q9H9A5 744 aaKnown RBP19.53■□□□□ 0.72
CLN3-219ENST00000565778 KCNK13Q9HB14 408 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 LANCL2Q9NS86 450 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 CD274Q9NZQ7 290 aa19.53■□□□□ 0.72
CLN3-219ENST00000565778 TRAV17A0A0B4J275 112 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 MAGEB17A8MXT2 336 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 CLGNO14967 610 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 TAPBPO15533 448 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 URI1O94763 535 aaPredicted RBP19.52■□□□□ 0.72
CLN3-219ENST00000565778 SERPINA6P08185 405 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 MYBL2P10244 700 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 JAK1P23458 1154 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 STX2P32856 288 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 TNFSF10P50591 281 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 OR4D2P58180 307 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 ZNF33BQ06732 778 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 FBXO48Q5FWF7 155 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 CDKL4Q5MAI5 379 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 SULT1C3Q6IMI6 304 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 FAM180AQ6UWF9 173 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 TMIGD1Q6UXZ0 262 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 KLHDC8AQ8IYD2 350 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 KRT78Q8N1N4 520 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 SUN3Q8TAQ9 357 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 M1APQ8TC57 530 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 CREB3L4Q8TEY5 395 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 CCT6BQ92526 530 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 ESAMQ96AP7 390 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 LPAR4Q99677 370 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 LRRC1Q9BTT6 524 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 RHBGQ9H310 441 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 CLK4Q9HAZ1 481 aaKnown RBP19.52■□□□□ 0.72
CLN3-219ENST00000565778 DNAJC11Q9NVH1 559 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 RNF112Q9ULX5 631 aa19.52■□□□□ 0.72
CLN3-219ENST00000565778 RP1L1Q8IWN7 2480 aaPredicted RBP19.52■□□□□ 0.72
CLN3-219ENST00000565778 ESPL1Q14674 2120 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 PSMD12O00232 456 aaPredicted RBP19.51■□□□□ 0.71
CLN3-219ENST00000565778 C1QAP02745 245 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 S100BP04271 92 aaPredicted RBP19.51■□□□□ 0.71
CLN3-219ENST00000565778 SMIM10L1P0DMW3 83 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 GGT5P36269 586 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 HSPA7P48741 367 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 STXBP1P61764 594 aaKnown RBP19.51■□□□□ 0.71
CLN3-219ENST00000565778 BTN3A2P78410 334 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 HYAL2Q12891 473 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 SLBPQ14493 270 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-219ENST00000565778 OR4D1Q15615 310 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 EXT1Q16394 746 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 FCRLBQ6BAA4 426 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 C8orf74Q6P047 294 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 PAPD4Q6PIY7 484 aaKnown RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms