RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 EPORP19235 508 aa14□□□□□ -0.17
CLN3-213ENST00000565047 GMPRP36959 345 aa14□□□□□ -0.17
CLN3-213ENST00000565047 GP5P40197 560 aa14□□□□□ -0.17
CLN3-213ENST00000565047 AGTR2P50052 363 aa14□□□□□ -0.17
CLN3-213ENST00000565047 PLTPP55058 493 aa14□□□□□ -0.17
CLN3-213ENST00000565047 E2F2Q14209 437 aa14□□□□□ -0.17
CLN3-213ENST00000565047 USP10Q14694 798 aaKnown RBP14□□□□□ -0.17
CLN3-213ENST00000565047 OR4D1Q15615 310 aa14□□□□□ -0.17
CLN3-213ENST00000565047 MINDY4Q4G0A6 757 aa14□□□□□ -0.17
CLN3-213ENST00000565047 DEFB134Q4QY38 66 aa14□□□□□ -0.17
CLN3-213ENST00000565047 CDKL4Q5MAI5 379 aa14□□□□□ -0.17
CLN3-213ENST00000565047 TMPRSS11BQ86T26 416 aa14□□□□□ -0.17
CLN3-213ENST00000565047 ST6GALNAC3Q8NDV1 305 aa14□□□□□ -0.17
CLN3-213ENST00000565047 TRPV3Q8NET8 790 aa14□□□□□ -0.17
CLN3-213ENST00000565047 PRR7Q8TB68 274 aa14□□□□□ -0.17
CLN3-213ENST00000565047 SSC4DQ8WTU2 575 aa14□□□□□ -0.17
CLN3-213ENST00000565047 METTL21AQ8WXB1 218 aa14□□□□□ -0.17
CLN3-213ENST00000565047 TSLPQ969D9 159 aa14□□□□□ -0.17
CLN3-213ENST00000565047 TAAR6Q96RI8 345 aa14□□□□□ -0.17
CLN3-213ENST00000565047 SLX1AQ9BQ83 275 aa14□□□□□ -0.17
CLN3-213ENST00000565047 CLK4Q9HAZ1 481 aaKnown RBP14□□□□□ -0.17
CLN3-213ENST00000565047 ZDHHC18Q9NUE0 388 aa14□□□□□ -0.17
CLN3-213ENST00000565047 ERRFI1Q9UJM3 462 aaPredicted RBP14□□□□□ -0.17
CLN3-213ENST00000565047 PTBP2Q9UKA9 531 aaKnown RBP14□□□□□ -0.17
CLN3-213ENST00000565047 MAST4O15021 2626 aa14□□□□□ -0.17
CLN3-213ENST00000565047 HMX2A2RU54 273 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 ANKUB1A6NFN9 424 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 WFS1O76024 890 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 AGFG2O95081 481 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 FHP07954 510 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 SERPINA6P08185 405 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 MAGEA4P43358 317 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 OLR1P78380 273 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 CAV1Q03135 178 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 DLG1Q12959 904 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 CDC16Q13042 620 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 KBTBD12Q3ZCT8 623 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 VN1R5Q7Z5H4 357 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 OR1N1Q8NGS0 311 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 M1APQ8TC57 530 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 CDKL2Q92772 493 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 KIAA1191Q96A73 305 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 TBC1D20Q96BZ9 403 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 WDR34Q96EX3 536 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 CNDP1Q96KN2 507 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 AIF1LQ9BQI0 150 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 RBCK1Q9BYM8 510 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 NT5DC2Q9H857 520 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 MMP25Q9NPA2 562 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 AGPAT4Q9NRZ5 378 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 MAP10Q9P2G4 905 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 ZNF490Q9ULM2 529 aaPredicted RBP13.99□□□□□ -0.17
CLN3-213ENST00000565047 UTP11Q9Y3A2 253 aaKnown RBP13.99□□□□□ -0.17
CLN3-213ENST00000565047 DYRK1BQ9Y463 629 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 CLDN16Q9Y5I7 305 aa13.99□□□□□ -0.17
CLN3-213ENST00000565047 SPTAN1Q13813 2472 aaKnown RBP13.99□□□□□ -0.17
CLN3-213ENST00000565047 IGKV3D-11A0A0A0MRZ8 115 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 PABPN1LA6NDY0 278 aaKnown RBP13.98□□□□□ -0.17
CLN3-213ENST00000565047 CDC123O75794 336 aaPredicted RBP13.98□□□□□ -0.17
CLN3-213ENST00000565047 WDR47O94967 919 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 LDLRP01130 860 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 STMN1P16949 149 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 GNAZP19086 355 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 CD22P20273 847 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 TDGF1P3P51864 188 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 RAB8AP61006 207 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 RAB10P61026 200 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ATP6V0D1P61421 351 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 AP2B1P63010 937 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ARG2P78540 354 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 RGS1Q08116 209 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ABRAXAS2Q15018 415 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 NSDHLQ15738 373 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ADPRMQ3LIE5 342 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 SFT2D3Q587I9 215 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 FBXO48Q5FWF7 155 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 GRTP1Q5TC63 336 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 NIPAL1Q6NVV3 410 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ISCA2Q86U28 154 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.98□□□□□ -0.17
CLN3-213ENST00000565047 PDPRQ8NCN5 879 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ELP5Q8TE02 316 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 TSPAN17Q96FV3 270 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 EGFL8Q99944 293 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 RAB17Q9H0T7 212 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 STMN3Q9NZ72 180 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 GPRC5BQ9NZH0 403 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 C19orf25Q9UFG5 118 aaPredicted RBP13.98□□□□□ -0.17
CLN3-213ENST00000565047 ASB1Q9Y576 335 aa13.98□□□□□ -0.17
CLN3-213ENST00000565047 ICE1Q9Y2F5 2266 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 SCN2AQ99250 2005 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 TRAV17A0A0B4J275 112 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 LRIT2A6NDA9 550 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 NCF1BA6NI72 391 aaPredicted RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 NCF1CA8MVU1 366 aaPredicted RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 MAN1A2O60476 641 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 F10P00742 488 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 SERPIND1P05546 499 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 SLC35E2BP0CK96 405 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 EDN3P14138 238 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms