RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 HIKESHIQ53FT3 197 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 BEND3Q5T5X7 828 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 SEL1L2Q5TEA6 688 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 AGBL2Q5U5Z8 902 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 SLX4IPQ5VYV7 408 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 OR52E8Q6IFG1 317 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TCEAL6Q6IPX3 200 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TTI2Q6NXR4 508 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 BHLHB9Q6PI77 547 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CCDC137Q6PK04 289 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 KIRREL2Q6UWL6 708 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 NDUFAF7Q7L592 441 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 VTCN1Q7Z7D3 282 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 DPPA2Q7Z7J5 298 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CHSY1Q86X52 802 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 HPS6Q86YV9 775 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 SFTPA1Q8IWL2 248 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ADGRF2Q8IZF7 708 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 GUF1Q8N442 669 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 GALNT4Q8N4A0 578 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 NOA1Q8NC60 698 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 STEAP2Q8NFT2 490 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 OR2T34Q8NGX1 318 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 GRPEL2Q8TAA5 225 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 STT3BQ8TCJ2 826 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 DUS3LQ96G46 650 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 PLEKHA8Q96JA3 519 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 C12orf66Q96MD2 445 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ZNF285Q96NJ3 590 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 FOXN4Q96NZ1 517 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 PRR25Q96S07 402 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 SSX3Q99909 188 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MACROD1Q9BQ69 325 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MXRA8Q9BRK3 442 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 FAM213AQ9BRX8 229 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TUBB2BQ9BVA1 445 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ZNF717Q9BY31 904 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 METTL9Q9H1A3 318 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ST6GALNAC4Q9H4F1 302 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TXLNGQ9NUQ3 528 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 NDUFAF4Q9P032 175 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MARCH4Q9P2E8 410 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 ENPP5Q9UJA9 477 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 DBNLQ9UJU6 430 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 KCND3Q9UK17 655 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 DNAJC12Q9UKB3 198 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 AMFRQ9UKV5 643 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ABCG2Q9UNQ0 655 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 DRG1Q9Y295 367 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 PRELID3BQ9Y3B1 194 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 STRAPQ9Y3F4 350 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 URB2Q14146 1524 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 LRPPRCP42704 1394 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 RFX7Q2KHR2 1363 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TNRQ92752 1358 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 KDM5BQ9UGL1 1544 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SMIM31A0A1B0GVY4 71 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SMIM30A4D0T7 59 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MAGEA13PA6NCF6 341 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PRR23AA6NEV1 266 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 BECN2A8MW95 431 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 E7ESA3 106 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 hCG_2039718K7EN88 272 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PPP6CO00743 305 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SCAMP2O15127 329 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 SLC31A2O15432 143 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PSMD3O43242 534 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 RGS10O43665 173 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 B4GALT2O60909 372 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ENTPD3O75355 529 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SCGB2A1O75556 95 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 VNN1O95497 513 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 WDPCPO95876 746 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CD63P08962 238 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 DBTP11182 482 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 AKR1A1P14550 325 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SAT1P21673 171 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MSR1P21757 451 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CMA1P23946 247 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PIK3R1P27986 724 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 EPHB2P29323 1055 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PCK1P35558 622 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ATP5C1P36542 298 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 MAGEA2P43356 314 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 OMPP47874 163 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 FASLGP48023 281 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CCT4P50991 539 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 TIAL1Q01085 375 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS35-205ENST00000563984 FLI1Q01543 452 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 SLC3A1Q07837 685 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 GALNT2Q10471 571 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ILF3Q12906 894 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS35-205ENST00000563984 TSPAN31Q12999 210 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 BAMBIQ13145 260 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ARHGEF7Q14155 803 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SLC29A2Q14542 456 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MFSD13AQ14CX5 517 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 NPY5RQ15761 445 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SLC5A12Q1EHB4 618 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 BTBD16Q32M84 506 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms