RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	DBX2	Q6ZNG2	339 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	NET1	Q7Z628	596 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	LAPTM4B	Q86VI4	370 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	PARG	Q86W56	976 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	TMPRSS12	Q86WS5	348 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	FAM129C	Q86XR2	697 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	PHACTR4	Q8IZ21	702 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	KRT78	Q8N1N4	520 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	MFSD2A	Q8NA29	543 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	PCYOX1L	Q8NBM8	494 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	GLB1L3	Q8NCI6	653 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	ABHD11	Q8NFV4	315 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	SH3KBP1	Q96B97	665 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	ROPN1L	Q96C74	230 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	WBP1	Q96G27	269 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	KLHDC7B	Q96G42	594 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	APIP	Q96GX9	242 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	ACAT2	Q9BWD1	397 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	GSDMC	Q9BYG8	508 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	PITHD1	Q9GZP4	211 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	MIR1-1HG	Q9H1L0	117 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	SPNS1	Q9H2V7	528 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	TCEAL2	Q9H3H9	227 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	DENND2D	Q9H6A0	471 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	XKR8	Q9H6D3	395 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	DMRT3	Q9NQL9	472 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	CUEDC1	Q9NWM3	386 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	ZNF624	Q9P2J8	865 aa	Predicted RBP	7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	VPS29	Q9UBQ0	182 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	SLC7A8	Q9UHI5	535 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	KLF15	Q9UIH9	416 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	PPT2	Q9UMR5	302 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	DLGAP4	Q9Y2H0	992 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	PCDHB11	Q9Y5F2	797 aa		7.21	□□□□□ -1.26
TPM1-231	ENST00000561395	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	HEATR5B	Q9P2D3	2071 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	IGKV1-8	A0A0C4DH67	115 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CCDC154	A6NI56	674 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	FXYD1	O00168	92 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CFLAR	O15519	480 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PRICKLE3	O43900	615 aa	Predicted RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SNRNP200	O75643	2136 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PDE5A	O76074	875 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CCNDBP1	O95273	360 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	ATP6V1G2	O95670	118 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	WNT1	P04628	370 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CELA2B	P08218	269 aa	Predicted RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CXCR2	P25025	360 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CD38	P28907	300 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PEBP1	P30086	187 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SERPINB1	P30740	379 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SHMT2	P34897	504 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SLC19A1	P41440	591 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	GRK6	P43250	576 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	BLK	P51451	505 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CLNS1A	P54105	237 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CLDN6	P56747	220 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	RPS13	P62277	151 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	RACK1	P63244	317 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	UBE2I	P63279	158 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	YBX1	P67809	324 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PHEX	P78562	749 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PRDX1	Q06830	199 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	FOXM1	Q08050	763 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	ACSM2A	Q08AH3	577 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	KPNB1	Q14974	876 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SPIN4	Q56A73	249 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	ZNF542P	Q5EBM4	170 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PIGG	Q5H8A4	983 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	COLEC12	Q5KU26	742 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	BROX	Q5VW32	411 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	ACSM2B	Q68CK6	577 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PRMT9	Q6P2P2	845 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	PRICKLE2	Q7Z3G6	844 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	VN1R5	Q7Z5H4	357 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SPACA3	Q8IXA5	215 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	FAM9C	Q8IZT9	166 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	FBXW8	Q8N3Y1	598 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	DPP10	Q8N608	796 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	ZNF740	Q8NDX6	193 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	OR4K1	Q8NGD4	311 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CLHC1	Q8NHS4	586 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CHTF18	Q8WVB6	975 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	LCN9	Q8WX39	176 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	DNASE2B	Q8WZ79	361 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	VPS33A	Q96AX1	596 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CXorf40B	Q96DE9	158 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	C11orf24	Q96F05	449 aa	Predicted RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	APOLD1	Q96LR9	279 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	SERPINI1	Q99574	410 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	ZBTB18	Q99592	522 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	AIF1L	Q9BQI0	150 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	GPATCH1	Q9BRR8	931 aa	Known RBP	7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	LRRC61	Q9BV99	259 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	DPY30	Q9C005	99 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	TWSG1	Q9GZX9	223 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	RHBG	Q9H310	441 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	NT5DC2	Q9H857	520 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	CAAP1	Q9H8G2	361 aa		7.2	□□□□□ -1.26
TPM1-231	ENST00000561395	TM9SF3	Q9HD45	589 aa		7.2	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms