RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 CCDC89Q8N998 374 aa17.33■□□□□ 0.36
TPM1-226ENST00000560959 NFAM1Q8NET5 270 aaPredicted RBP17.33■□□□□ 0.36
TPM1-226ENST00000560959 ZCCHC10Q8TBK6 192 aa17.33■□□□□ 0.36
TPM1-226ENST00000560959 CCDC138Q96M89 665 aa17.33■□□□□ 0.36
TPM1-226ENST00000560959 DEFB126Q9BYW3 111 aa17.33■□□□□ 0.36
TPM1-226ENST00000560959 INTS10Q9NVR2 710 aaKnown RBP17.33■□□□□ 0.36
TPM1-226ENST00000560959 RPH3AQ9Y2J0 694 aaPredicted RBP17.33■□□□□ 0.36
TPM1-226ENST00000560959 ABCA4P78363 2273 aa17.33■□□□□ 0.36
TPM1-226ENST00000560959 ACANP16112 2415 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 TMEM200CA6NKL6 621 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 LCMT2O60294 686 aaKnown RBP17.32■□□□□ 0.36
TPM1-226ENST00000560959 GALR3O60755 368 aaPredicted RBP17.32■□□□□ 0.36
TPM1-226ENST00000560959 ETS1P14921 441 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 GXYLT1Q4G148 440 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 KIAA0930Q6ICG6 404 aaPredicted RBP17.32■□□□□ 0.36
TPM1-226ENST00000560959 RGS9BPQ6ZS82 235 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 CENPUQ71F23 418 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 C17orf64Q86WR6 236 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 CILP2Q8IUL8 1156 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 RPRMLQ8N4K4 120 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 MFSD9Q8NBP5 474 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 OR52N2Q8NGI0 321 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 KCNJ9Q92806 393 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 HES6Q96HZ4 224 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 PTCHD1Q96NR3 888 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 ALPK1Q96QP1 1244 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 SLC30A3Q99726 388 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 SOX13Q9UN79 622 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 PACSIN2Q9UNF0 486 aaPredicted RBP17.32■□□□□ 0.36
TPM1-226ENST00000560959 L3MBTL1Q9Y468 752 aa17.32■□□□□ 0.36
TPM1-226ENST00000560959 OR14I1A6ND48 311 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 GOLGA8KD6RF30 607 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 GOLGA8TH3BQL2 631 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 EIF3FO00303 357 aaPredicted RBP17.31■□□□□ 0.36
TPM1-226ENST00000560959 CHST10O43529 356 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 CCND1P24385 295 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 RPL22P35268 128 aaKnown RBP17.31■□□□□ 0.36
TPM1-226ENST00000560959 COILP38432 576 aaPredicted RBP17.31■□□□□ 0.36
TPM1-226ENST00000560959 PEX19P40855 299 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 RFC3P40938 356 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 TBPL1P62380 186 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 FOXD4Q12950 439 aaPredicted RBP17.31■□□□□ 0.36
TPM1-226ENST00000560959 PWP1Q13610 501 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 CYP4Z2PQ8N1L4 340 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 OR5T3Q8NGG3 340 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 POLDIP3Q9BY77 421 aaKnown RBP17.31■□□□□ 0.36
TPM1-226ENST00000560959 RBCK1Q9BYM8 510 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 SLC6A16Q9GZN6 736 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 ZNF358Q9NW07 568 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 DHRS7Q9Y394 339 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 REXO2Q9Y3B8 237 aaKnown RBP17.31■□□□□ 0.36
TPM1-226ENST00000560959 VPS13CQ709C8 3753 aa17.31■□□□□ 0.36
TPM1-226ENST00000560959 TCRBV16S1A1N1A0A5B0 115 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 BCKDKO14874 412 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 PDE9AO76083 593 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 ALOX12P18054 663 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 PAMP19021 973 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 ZFP36L2P47974 494 aaKnown RBP17.3■□□□□ 0.36
TPM1-226ENST00000560959 CLCN2P51788 898 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 CDK16Q00536 496 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 NEPROQ6NW34 567 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 UBE2R2Q712K3 238 aaPredicted RBP17.3■□□□□ 0.36
TPM1-226ENST00000560959 CAMKMTQ7Z624 323 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 STRA8Q7Z7C7 330 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 PRUNE1Q86TP1 453 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 GPALPP1Q8IXQ4 340 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 CYP4X1Q8N118 509 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 TMEM156Q8N614 296 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 APCDD1LQ8NCL9 501 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 ZNF740Q8NDX6 193 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 OR5M3Q8NGP4 307 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 GIMAP7Q8NHV1 300 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 CREB3L4Q8TEY5 395 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 MBD6Q96DN6 1003 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 TTYH2Q9BSA4 534 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 TSGA10Q9BZW7 698 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 GSX1Q9H4S2 264 aaPredicted RBP17.3■□□□□ 0.36
TPM1-226ENST00000560959 ZDHHC11Q9H8X9 412 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 TIMMDC1Q9NPL8 285 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 MED16Q9Y2X0 877 aa17.3■□□□□ 0.36
TPM1-226ENST00000560959 IGKV3D-11A0A0A0MRZ8 115 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 ZNF860A6NHJ4 632 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 FIGNL2A6NMB9 653 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 TUBB4AP04350 444 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 DNASE1P24855 282 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 MGAT1P26572 445 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 ACVR2AP27037 513 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 TERF2Q15554 542 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 CEBPEQ15744 281 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 LCTLQ6UWM7 567 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 CES3Q6UWW8 571 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 ARSKQ6UWY0 536 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 MDGA2Q7Z553 956 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 ABHD11Q8NFV4 315 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 OR4K1Q8NGD4 311 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 C1orf54Q8WWF1 131 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 PRDM9Q9NQV7 894 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 RASSF1Q9NS23 344 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 SYBUQ9NX95 663 aa17.29■□□□□ 0.36
TPM1-226ENST00000560959 PPIEQ9UNP9 301 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms