RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 NDUFS4O43181 175 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 DUX1O43812 170 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 PCDH7O60245 1069 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 STATHP02808 62 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 ANXA4P09525 319 aaPredicted RBP10.71□□□□□ -0.69
USP3-218ENST00000560202 PNLIPP16233 465 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 PEX19P40855 299 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 ZFP36L2P47974 494 aaKnown RBP10.71□□□□□ -0.69
USP3-218ENST00000560202 RAP1GDS1P52306 607 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 POLR2JP52435 117 aaKnown RBP10.71□□□□□ -0.69
USP3-218ENST00000560202 GFERP55789 205 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 CLDN8P56748 225 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 KCNK10P57789 538 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 GPLD1P80108 840 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 HYAL2Q12891 473 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 STX5Q13190 355 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 TMEM35AQ53FP2 167 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 FAM92BQ6ZTR7 304 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 RNF44Q7L0R7 432 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 VN1R4Q7Z5H5 301 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 ASPGQ86U10 573 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 KRTCAP2Q8N6L1 136 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 Q8N9G6 341 aaPredicted RBP10.71□□□□□ -0.69
USP3-218ENST00000560202 GLB1L3Q8NCI6 653 aaPredicted RBP10.71□□□□□ -0.69
USP3-218ENST00000560202 FBXO27Q8NI29 283 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 WDR48Q8TAF3 677 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 TSPEARQ8WU66 669 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 CCDC74AQ96AQ1 378 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 RGMAQ96B86 450 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 ZDHHC12Q96GR4 267 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 TGM7Q96PF1 710 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 TSSK3Q96PN8 268 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 MAP3K3Q99759 626 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 MACROD1Q9BQ69 325 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 BTBD10Q9BSF8 475 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 REXO4Q9GZR2 422 aaKnown RBP10.71□□□□□ -0.69
USP3-218ENST00000560202 FAM192AQ9GZU8 254 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 LRMDAQ9H2I8 198 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.71□□□□□ -0.69
USP3-218ENST00000560202 TAS2R1Q9NYW7 299 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 U3KQA8 63 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 GNG14A0A1W2PPG7 69 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 CPED1A4D0V7 1026 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 EME2A4GXA9 379 aaPredicted RBP10.7□□□□□ -0.7
USP3-218ENST00000560202 RTCAO00442 366 aaKnown RBP10.7□□□□□ -0.7
USP3-218ENST00000560202 PLPP1O14494 284 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 AIM2O14862 343 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 KLK1P06870 262 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 RETP07949 1114 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 CAPN3P20807 821 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 CD1CP29017 333 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 BSGP35613 385 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 KCNJ2P63252 427 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 MXRA7P84157 204 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 KLC1Q07866 573 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 PWP1Q13610 501 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 RCAN2Q14206 197 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 ADPRMQ3LIE5 342 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 AMZ1Q400G9 498 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 VPS26BQ4G0F5 336 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 TOR1AIP1Q5JTV8 583 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 GUSBP11Q6P575 273 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 RIPOR1Q6ZS17 1223 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 SPRED1Q7Z699 444 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 UBE3DQ7Z6J8 389 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 C19orf47Q8N9M1 422 aaKnown RBP10.7□□□□□ -0.7
USP3-218ENST00000560202 RBM15BQ8NDT2 890 aaKnown RBP10.7□□□□□ -0.7
USP3-218ENST00000560202 NT5CQ8TCD5 201 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 RCN3Q96D15 328 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 MS4A6EQ96DS6 147 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 TM4SF19Q96DZ7 209 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 EGLN2Q96KS0 407 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 TMEM74Q96NL1 305 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 CD180Q99467 661 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 ZBTB18Q99592 522 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 SORBS1Q9BX66 1292 aaKnown RBP10.7□□□□□ -0.7
USP3-218ENST00000560202 ZNF717Q9BY31 904 aaPredicted RBP10.7□□□□□ -0.7
USP3-218ENST00000560202 SLC6A16Q9GZN6 736 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 AICDAQ9GZX7 198 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 C1orf21Q9H246 121 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 KLHL31Q9H511 634 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 EFCAB1Q9HAE3 211 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 SLC52A3Q9NQ40 469 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 DMDP11532 3685 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 VPS13AQ96RL7 3174 aa10.7□□□□□ -0.7
USP3-218ENST00000560202 LOC105369274A0A096LPK9 316 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 LOC102723532A0A0G2JNH3 316 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 A0A1W2PP18 115 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 TLCD2A6NGC4 264 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 CCDC154A6NI56 674 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 BBIP1A8MTZ0 92 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 FBP2O00757 339 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 GYG2O15488 501 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 GBAP04062 536 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 SLC35G6P0C7Q6 338 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 ZNF883P0CG24 379 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 PRPS1L1P21108 318 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 TPP2P29144 1249 aaPredicted RBP10.69□□□□□ -0.7
USP3-218ENST00000560202 CPOXP36551 454 aa10.69□□□□□ -0.7
USP3-218ENST00000560202 ASMTP46597 345 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms