RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SPACA6W5XKT8 324 aa8.24□□□□□ -1.09
USP3-208ENST00000558285 CHD6Q8TD26 2715 aa8.24□□□□□ -1.09
USP3-208ENST00000558285 FRYQ5TBA9 3013 aa8.24□□□□□ -1.09
USP3-208ENST00000558285 LOC105369274A0A096LPK9 316 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 LOC102723532A0A0G2JNH3 316 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ESYT3A0FGR9 886 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ANKDD1BA6NHY2 528 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 HAT1O14929 419 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 TP73O15350 636 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 NDUFS4O43181 175 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 KLF7O75840 302 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 RBP1P09455 135 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ZGLP1P0C6A0 271 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ITGA3P26006 1051 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 GCGRP47871 477 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 OR1D4P47884 311 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 AGTR2P50052 363 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 PPP2R2AP63151 447 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CSNK1G2P78368 415 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 MXRA7P84157 204 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CDC16Q13042 620 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ATP1A4Q13733 1029 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 TGFBIQ15582 683 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 TSNQ15631 228 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 DCAF10Q5QP82 559 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 MFSD4BQ5TF39 518 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 METTL2BQ6P1Q9 378 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 NXPE4Q6UWF7 544 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ZDHHC24Q6UX98 284 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 TMPRSS11BQ86T26 416 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 LRRC56Q8IYG6 542 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 OR4N4Q8N0Y3 316 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ZADH2Q8N4Q0 377 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SNX31Q8N9S9 440 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 STT3BQ8TCJ2 826 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ADAMTS17Q8TE56 1095 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 KIAA1191Q96A73 305 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 MTBPQ96DY7 904 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 OR1F2PQ96R84 312 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 NRTNQ99748 197 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 WDR83Q9BRX9 315 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 SARGQ9BW04 601 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SLC29A3Q9BZD2 475 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 TGIF2Q9GZN2 237 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 VCX3BQ9H321 246 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 VCX3AQ9NNX9 186 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.23□□□□□ -1.09
USP3-208ENST00000558285 ABI3Q9P2A4 366 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SLC17A6Q9P2U8 582 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 C3orf18Q9UK00 162 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 MRPS33Q9Y291 106 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 MTO1Q9Y2Z2 717 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 LRRC42Q9Y546 428 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ZFYVE26Q68DK2 2539 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 IGLV3-12A0A075B6K2 115 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 NSG1A0A0A6YYJ2 146 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 VSTM2BA6NLU5 285 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SUPT3HB4E1H0 165 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CDC7O00311 574 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 PHGDHO43175 533 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 KERAO60938 352 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SUPT3HO75486 399 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 HPP00738 406 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CAPN1P07384 714 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 COL6A2P12110 1019 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 NQO1P15559 274 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 CASRP41180 1078 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SEC24CP53992 1094 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 MYBPC3Q14896 1274 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ACAP2Q15057 778 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 PDK4Q16654 411 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 C10orf62Q5T681 223 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 ATP1A1-AS1Q5TC04 95 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 AGAP7PQ5VUJ5 663 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ATG9BQ674R7 924 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 JMJD6Q6NYC1 403 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 RIPOR1Q6ZS17 1223 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CPLX4Q7Z7G2 160 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 KBTBD2Q8IY47 623 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 GSPT2Q8IYD1 628 aaKnown RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 GALNT16Q8N428 558 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 OR4K1Q8NGD4 311 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 RHEBL1Q8TAI7 183 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 AGAP11Q8TF27 550 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 RNF31Q96EP0 1072 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CHMP6Q96FZ7 201 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 AGAP4Q96P64 663 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 RABEP2Q9H5N1 569 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 NT5DC2Q9H857 520 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 COPS7BQ9H9Q2 264 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 PLAC1Q9HBJ0 212 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SLAMF7Q9NQ25 335 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 ZNF71Q9NQZ8 489 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 ZDHHC18Q9NUE0 388 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 CUEDC1Q9NWM3 386 aaPredicted RBP8.23□□□□□ -1.09
USP3-208ENST00000558285 OPTCQ9UBM4 332 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 SLC22A14Q9Y267 594 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 MAU2Q9Y6X3 613 aa8.23□□□□□ -1.09
USP3-208ENST00000558285 A0A0A6YYC8 382 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 IGKV1-8A0A0C4DH67 115 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms