RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MS4A12Q9NXJ0 267 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 ATP6V1HQ9UI12 483 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 PCDHB7Q9Y5E2 793 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 HOXA2O43364 376 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 TNFRSF21O75509 655 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 GCM2O75603 506 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 NUDT7P0C024 238 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 ENDOUP21128 410 aaKnown RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 IDSP22304 550 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 TCEA1P23193 301 aaKnown RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 DDOSTP39656 456 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 NR4A2P43354 598 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 MAPK9P45984 424 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 XKR6Q5GH73 641 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 MEDAGQ5VYS4 303 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 PLAG1Q6DJT9 500 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 Q6ZPB1 254 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 ATCAYQ86WG3 371 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 FAM217AQ8IXS0 508 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 OXR1Q8N573 874 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 C1orf52Q8N6N3 182 aaKnown RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 B3GNT7Q8NFL0 401 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 LILRB4Q8NHJ6 448 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 UTP15Q8TED0 518 aaKnown RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 WDFY2Q96P53 400 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 PIP5K1AQ99755 562 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 P2RY13Q9BPV8 354 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 MRPL9Q9BYD2 267 aaKnown RBP15.65■□□□□ 0.1
SHMT2-231ENST00000557433 RNF38Q9H0F5 515 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 AMBNQ9NP70 447 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 QPCTLQ9NXS2 382 aa15.65■□□□□ 0.1
SHMT2-231ENST00000557433 A0A1W2PQ67 120 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 SLC35F4A4IF30 521 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 MGAT4DA6NG13 374 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 NPIPB15A6NHN6 443 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 K7ERQ8 282 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 YY2O15391 372 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 AP2A2O94973 939 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CCNB2O95067 398 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CELF2O95319 508 aaKnown RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 C1QCP02747 245 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ANXA4P09525 319 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 HLA-EP13747 358 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ITPKAP23677 461 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CHMP24386 653 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 RPS5P46782 204 aaKnown RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 LIMS1P48059 325 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 NUDT6P53370 316 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CDH12P55289 794 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 DMC1Q14565 340 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF630Q2M218 657 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 EXOC3L2Q2M3D2 409 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ATP13A5Q4VNC0 1218 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CRB2Q5IJ48 1285 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 LRRC66Q68CR7 880 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 TRIM40Q6P9F5 258 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 NAGSQ8N159 534 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 OR4A15Q8NGL6 344 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 OR6K2Q8NGY2 324 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 MCCC1Q96RQ3 725 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 SDHCQ99643 169 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 SMURF1Q9HCE7 757 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ASAH2Q9NR71 780 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ZAR1LA6NP61 321 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 SCG5P05408 212 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 GSTM1P09488 218 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 HSMCR30P0CW71 290 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ATP1B2P14415 290 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 RCVRNP35243 200 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 XCR1P46094 333 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 GAB1Q13480 694 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 TAF12Q16514 161 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CLPPQ16740 277 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 TSTQ16762 297 aaKnown RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 RNLSQ5VYX0 342 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 THOC6Q86W42 341 aaKnown RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 RAB43Q86YS6 212 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CLIP4Q8N3C7 705 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 OR2AP1Q8NGE2 309 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 WBP2Q969T9 261 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 REPS1Q96D71 796 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ECHDC3Q96DC8 303 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 NIPSNAP1Q9BPW8 284 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 GPBP1L1Q9HC44 474 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 ABCB8Q9NUT2 735 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 TMEM184CQ9NVA4 438 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 SEC14L4Q9UDX3 406 aa15.64■□□□□ 0.09
SHMT2-231ENST00000557433 CFAP20Q9Y6A4 193 aaKnown RBP15.64■□□□□ 0.09
SHMT2-231ENST00000557433 PIKFYVEQ9Y2I7 2098 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 QSOX1O00391 747 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 SMAD6O43541 496 aaKnown RBP15.63■□□□□ 0.09
SHMT2-231ENST00000557433 GALTP07902 379 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 RHCEP18577 417 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 CBLP22681 906 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 TIA1P31483 386 aaKnown RBP eCLIP15.63■□□□□ 0.093e-16■■■□□ 15.8
SHMT2-231ENST00000557433 SNRPD1P62314 119 aaKnown RBP15.63■□□□□ 0.09
SHMT2-231ENST00000557433 SMAD3P84022 425 aaKnown RBP15.63■□□□□ 0.09
SHMT2-231ENST00000557433 GPR50Q13585 617 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 SCARB2Q14108 478 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 DOC2AQ14183 400 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms