RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 F8W8V4 182 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 ALPPP05187 535 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 KLK3P07288 261 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 ESRRAP11474 423 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CDH3P22223 829 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 ACADLP28330 430 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 PRDX3P30048 256 aaKnown RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 IDH3AP50213 366 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 PGGT1BP53609 377 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CDKN2DP55273 166 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 KCNK10P57789 538 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 HSD11B2P80365 405 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CDSNQ15517 529 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 AARS2Q5JTZ9 985 aaKnown RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 DCAF10Q5QP82 559 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 PTRHD1Q6GMV3 140 aaKnown RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 ZNF549Q6P9A3 640 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 EPGNQ6UW88 154 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 PIWIL4Q7Z3Z4 852 aaKnown RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 MAVSQ7Z434 540 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 MRGPREQ86SM8 312 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 AMIGO1Q86WK6 493 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 SLC22A9Q8IVM8 553 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 TMEM151BQ8IW70 566 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 D2HGDHQ8N465 521 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 ZNF781Q8N8C0 355 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 LKAAEAR1Q8TD35 194 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 LPGAT1Q92604 370 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CNDP1Q96KN2 507 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 EBF4Q9BQW3 602 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CCDC106Q9BWC9 280 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 TFB2MQ9H5Q4 396 aaKnown RBP11.94□□□□□ -0.5
SHMT2-230ENST00000557427 SOHLH2Q9NX45 425 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 VTI1BQ9UEU0 232 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 PLAGL1Q9UM63 463 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CRYL1Q9Y2S2 319 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 COMMD10Q9Y6G5 202 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 CCDC189A1A4V9 331 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 BTN3A1O00481 513 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 PRMT5O14744 637 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 KLF7O75840 302 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 WFS1O76024 890 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 ZBTB11O95625 1053 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 CD99P14209 185 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 CD1EP15812 388 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 FMO4P31512 558 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 OTX2P32243 289 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 KIR3DL1P43629 444 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 TSFMP43897 325 aaKnown RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 TTPAP49638 278 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 RPL14P50914 215 aaKnown RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 NAGLUP54802 743 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 TIAL1Q01085 375 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 GALNT1Q10472 559 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 SNCBQ16143 134 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 ARL13AQ5H913 290 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 CFAP157Q5JU67 520 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 TMTC4Q5T4D3 741 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 METTL21CQ5VZV1 264 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 TMEM207Q6UWW9 146 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 VRK3Q8IV63 474 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 KIRREL3Q8IZU9 778 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 ZNF808Q8N4W9 903 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 ANKRD49Q8WVL7 239 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 CD180Q99467 661 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 WDR77Q9BQA1 342 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-230ENST00000557427 BTBD10Q9BSF8 475 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 SYTL2Q9HCH5 934 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 CIDEBQ9UHD4 219 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 TAGLN3Q9UI15 199 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 ACANP16112 2415 aa11.93□□□□□ -0.5
SHMT2-230ENST00000557427 SEC16AO15027 2179 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 A8MT66 165 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 MATN2O00339 956 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 HDAC3O15379 428 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 JRKO75564 520 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 IPO13O94829 963 aaKnown RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ATP6V1G2O95670 118 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 TPBGLP0DKB5 382 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 PVRP15151 417 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ZNF37AP17032 561 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 TFEBP19484 476 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ALDH18A1P54886 795 aaKnown RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ADARP55265 1226 aaKnown RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 SOX8P57073 446 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 PLOD1Q02809 727 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 NCF4Q15080 339 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 PTCHD3Q3KNS1 767 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ZNF324BQ6AW86 544 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ISCA2Q86U28 154 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 KMT5CQ86Y97 462 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 TREML1Q86YW5 311 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 TBC1D21Q8IYX1 336 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 ADGRF3Q8IZF5 1079 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 SPATA6LQ8N4H0 392 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 C2orf73Q8N5S3 287 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-230ENST00000557427 LMNTD1Q8N9Z9 388 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 RHEBL1Q8TAI7 183 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 MAGEC3Q8TD91 643 aa11.92□□□□□ -0.5
SHMT2-230ENST00000557427 SKA2Q8WVK7 121 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms