RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 CHST10O43529 356 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 PEX1O43933 1283 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 HS6ST1O60243 411 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 PDE9AO76083 593 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 HOXB4P17483 251 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-223ENST00000556689 JAK1P23458 1154 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 MSX1P28360 303 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 COILP38432 576 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-223ENST00000556689 RFC3P40938 356 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 IST1P53990 364 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 CDK16Q00536 496 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 MEF2AQ02078 507 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-223ENST00000556689 PMPCAQ10713 525 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 CCNG2Q16589 344 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 KIAA0930Q6ICG6 404 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-223ENST00000556689 ARHGAP11AQ6P4F7 1023 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 C17orf64Q86WR6 236 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 MFSD9Q8NBP5 474 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 GIMAP7Q8NHV1 300 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 KCNJ9Q92806 393 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 PTCHD1Q96NR3 888 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 DEFB126Q9BYW3 111 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 HEATR5BQ9P2D3 2071 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 MTORP42345 2549 aa11.85□□□□□ -0.51
SHMT2-223ENST00000556689 GALR3O60755 368 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-223ENST00000556689 B4GALT2O60909 372 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 DNAJB6O75190 326 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 TBPL1P62380 186 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 SKP1P63208 163 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 MYBPHQ13203 477 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 CMPK2Q5EBM0 449 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 NIPAL1Q6NVV3 410 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 PAOXQ6QHF9 649 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 ACAD11Q709F0 780 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 GSTA5Q7RTV2 222 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 TMEM139Q8IV31 216 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 SPNS2Q8IVW8 549 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 CLYBLQ8N0X4 340 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 AFAP1L2Q8N4X5 818 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 ZNF740Q8NDX6 193 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 CHDHQ8NE62 594 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-223ENST00000556689 ALKBH8Q96BT7 664 aaKnown RBP11.84□□□□□ -0.51
SHMT2-223ENST00000556689 FOXC2Q99958 501 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 ZKSCAN5Q9Y2L8 839 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 MED16Q9Y2X0 877 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 ITPR3Q14573 2671 aa11.84□□□□□ -0.51
SHMT2-223ENST00000556689 SAGE2PA6NJ88 616 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 OR1F1O43749 312 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ZWINTO95229 277 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CDH1P12830 882 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 NPPBP16860 134 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ALOX12P18054 663 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CCND1P24385 295 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 BTG2P78543 158 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 SARNPP82979 210 aaKnown RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 NAE1Q13564 534 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 PWP1Q13610 501 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 THOC5Q13769 683 aaKnown RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 DHX34Q14147 1143 aaKnown RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 DEFB134Q4QY38 66 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ARMC3Q5W041 872 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ZNF470Q6ECI4 717 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CASC4Q6P4E1 433 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ZNF549Q6P9A3 640 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 DRICH1Q6PGQ1 229 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 QSOX2Q6ZRP7 698 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 TGIF2LYQ8IUE0 185 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CCDC71Q8IV32 467 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CPNE9Q8IYJ1 553 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ARMC10Q8N2F6 343 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 TMEM156Q8N614 296 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ZFP62Q8NB50 900 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 NFAM1Q8NET5 270 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 OR52N2Q8NGI0 321 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 NRGNQ92686 78 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 GPR21Q99679 349 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 DESI2Q9BSY9 194 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 ATG10Q9H0Y0 220 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 DEFB127Q9H1M4 99 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CXXC4Q9H2H0 198 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 KCNF1Q9H3M0 494 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 FBXO6Q9NRD1 293 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 PLSCR2Q9NRY7 297 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 CCM2LQ9NUG4 571 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-223ENST00000556689 SH2B3Q9UQQ2 575 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 COMMD10Q9Y6G5 202 aa11.83□□□□□ -0.52
SHMT2-223ENST00000556689 TCRBV7S3A2A0A539 114 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 MAGEB16A2A368 324 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 A8MUA0 341 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 EIF3FO00303 357 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-223ENST00000556689 NDUFS4O43181 175 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 KLK8O60259 260 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 CEP104O60308 925 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 AVILO75366 819 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 TPSB2P20231 275 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 CCR8P51685 355 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 NUP107P57740 925 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 GPR85P60893 370 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 PPP2R2AP63151 447 aa11.82□□□□□ -0.52
SHMT2-223ENST00000556689 OLR1P78380 273 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms