RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CORO2AQ92828 525 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 UBQLN3Q9H347 655 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 C5orf66Q9H5L9 145 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 POLKQ9UBT6 870 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 POMT2Q9UKY4 750 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 CSAG2Q9Y5P2 127 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 POMT1Q9Y6A1 747 aa3.73□□□□□ -1.81
SCFD1-221ENST00000556534 IGHV3-38A0A0C4DH36 116 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 hCG_38984A0A1B0GV85 526 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 NKX6-3A6NJ46 265 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 ASB14A6NK59 587 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 NPIPA3F8WFD2 350 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 KIF5CO60282 957 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 LRCH4O75427 683 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 ANKRD34CP0C6C1 535 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 ZNF10P21506 573 aaPredicted RBP3.72□□□□□ -1.81
SCFD1-221ENST00000556534 HOXC13P31276 330 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 GPR183P32249 361 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 GRB14Q14449 540 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 SPANXN4Q5MJ08 99 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 SPOUT1Q5T280 376 aaKnown RBP3.72□□□□□ -1.81
SCFD1-221ENST00000556534 MPP7Q5T2T1 576 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 GLRX5Q86SX6 157 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 VSIG1Q86XK7 387 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 CROCCP3Q8IVE0 287 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 DND1Q8IYX4 353 aaKnown RBP3.72□□□□□ -1.81
SCFD1-221ENST00000556534 EXOC4Q96A65 974 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 TSSK2Q96PF2 358 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 GAL3ST4Q96RP7 486 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 TRIM6Q9C030 488 aaPredicted RBP3.72□□□□□ -1.81
SCFD1-221ENST00000556534 C10orf88Q9H8K7 445 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 PANK3Q9H999 370 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 NLGN3Q9NZ94 848 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 CTSZQ9UBR2 303 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 ZNF510Q9Y2H8 683 aa3.72□□□□□ -1.81
SCFD1-221ENST00000556534 A0A0B4J203 849 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 RNF103O00237 685 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 MLNRO43193 412 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 EEF2P13639 858 aaKnown RBP3.71□□□□□ -1.82
SCFD1-221ENST00000556534 ACADSP16219 412 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 CAPN2P17655 700 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 AOC1P19801 751 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 ETV5P41161 510 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 OR3A1P47881 315 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 OR3A3P47888 321 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 NDST2P52849 883 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 SLC8A3P57103 927 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 TWISTNBQ3B726 338 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-221ENST00000556534 ZNF542PQ5EBM4 170 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 FAM47EQ6ZV65 393 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 FAM131BQ86XD5 332 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 MEX3DQ86XN8 651 aaKnown RBP3.71□□□□□ -1.82
SCFD1-221ENST00000556534 LYG1Q8N1E2 194 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 OR9Q2Q8NGE9 314 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 MR1Q95460 341 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 FAM162AQ96A26 154 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 BSCL2Q96G97 398 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-221ENST00000556534 FNDC4Q9H6D8 234 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-221ENST00000556534 MINDY3Q9H8M7 445 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 MRGBPQ9NV56 204 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 BAIAP2L1Q9UHR4 511 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 PILRAQ9UKJ1 303 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 SATB2Q9UPW6 733 aa3.71□□□□□ -1.82
SCFD1-221ENST00000556534 A0A1B0GVY2 172 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 PGRMC2O15173 223 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 TBCAO75347 108 aaKnown RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 IGHV3-13P01766 116 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 MT-ND2P03891 347 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 RPLP0P05388 317 aaKnown RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 SP9P0CG40 484 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 SCG2P13521 617 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 BTG1P62324 171 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 KIAA0141Q14154 515 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 UPP1Q16831 310 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 MS4A18Q3C1V0 323 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 SPINK14Q6IE38 97 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 MACC1Q6ZN28 852 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 TRMT11Q7Z4G4 463 aaKnown RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 PHLDB2Q86SQ0 1253 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 SLC47A2Q86VL8 602 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 DZIP1Q86YF9 867 aaKnown RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 LMNTD2Q8IXW0 634 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 TDHQ8IZJ6 230 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 CCDC185Q8N715 623 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 AMER3Q8N944 861 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 GPATCH11Q8N954 259 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 OR5M9Q8NGP3 310 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 DNASE1L2Q92874 299 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 C11orf52Q96A22 123 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 IL12RB2Q99665 862 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 SOSTQ9BQB4 213 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 RSPH9Q9H1X1 276 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 RPF1Q9H9Y2 349 aaKnown RBP3.7□□□□□ -1.82
SCFD1-221ENST00000556534 GNB4Q9HAV0 340 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 PLCL2Q9UPR0 1127 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 RNF123Q5XPI4 1314 aa3.7□□□□□ -1.82
SCFD1-221ENST00000556534 SPATA31D1Q6ZQQ2 1576 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 IGLV4-3A0A075B6K6 122 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 A0A0U1RQG5 324 aaPredicted RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms