RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 TMIGD1Q6UXZ0 262 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 QSOX2Q6ZRP7 698 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 LINC00696Q6ZRV3 163 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 CAPN12Q6ZSI9 719 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 ANKRD37Q7Z713 158 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 TMPRSS11BQ86T26 416 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 GPSM1Q86YR5 675 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 RELL1Q8IUW5 271 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 KRT78Q8N1N4 520 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 ST6GALNAC3Q8NDV1 305 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 BRIX1Q8TDN6 353 aaKnown RBP11.16□□□□□ -0.62
VRK1-204ENST00000555351 UTP15Q8TED0 518 aaKnown RBP11.16□□□□□ -0.62
VRK1-204ENST00000555351 CREB3L4Q8TEY5 395 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 TBC1D20Q96BZ9 403 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 MOCOSQ96EN8 888 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 C19orf60Q96EN9 201 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 TSNARE1Q96NA8 513 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 TSPYL1Q9H0U9 437 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 SPNS1Q9H2V7 528 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 MMP25Q9NPA2 562 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 PTGFRNQ9P2B2 879 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 PCDHGB6Q9Y5F9 930 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 HECTD1Q9ULT8 2610 aa11.16□□□□□ -0.62
VRK1-204ENST00000555351 RELNP78509 3460 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 A0A088AWK7 358 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 CHST10O43529 356 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 CLEC3AO75596 197 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 AGFG2O95081 481 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 STATHP02808 62 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ITGAMP11215 1152 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 RNH1P13489 461 aaKnown RBP11.15□□□□□ -0.62
VRK1-204ENST00000555351 EDN3P14138 238 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ZNF10P21506 573 aaPredicted RBP11.15□□□□□ -0.62
VRK1-204ENST00000555351 CASP2P42575 452 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ARG2P78540 354 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 HYAL2Q12891 473 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 LAPTM5Q13571 262 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 E2F2Q14209 437 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ELOAQ14241 798 aaKnown RBP11.15□□□□□ -0.62
VRK1-204ENST00000555351 ABRAXAS2Q15018 415 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 NSDHLQ15738 373 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ADPRMQ3LIE5 342 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 DEFB134Q4QY38 66 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 MFSD4BQ5TF39 518 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ABHD17BQ5VST6 288 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 C8orf74Q6P047 294 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 CTAGE3PQ8IX95 158 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 LGI4Q8N135 537 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 STAG3L4Q8TBR4 150 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 SSC4DQ8WTU2 575 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 FAR1Q8WVX9 515 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 GAL3ST3Q96A11 431 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 PEX11GQ96HA9 241 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ZNF354BQ96LW1 612 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 LPAR4Q99677 370 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 EFCAB11Q9BUY7 163 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 NPLQ9BXD5 320 aaPredicted RBP11.15□□□□□ -0.62
VRK1-204ENST00000555351 CAB39LQ9H9S4 337 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 NMRAL1Q9HBL8 299 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 ZDHHC18Q9NUE0 388 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 DNAJC11Q9NVH1 559 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 MAP10Q9P2G4 905 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 PTBP2Q9UKA9 531 aaKnown RBP11.15□□□□□ -0.62
VRK1-204ENST00000555351 NTNG1Q9Y2I2 539 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 CSAG2Q9Y5P2 127 aa11.15□□□□□ -0.62
VRK1-204ENST00000555351 PRRC2CQ9Y520 2896 aaKnown RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 USP9XQ93008 2570 aaPredicted RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 ANKUB1A6NFN9 424 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 WIPF3A6NGB9 483 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 CLGNO14967 610 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 TAPBPO15533 448 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 PHGDHO43175 533 aaKnown RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 STK16O75716 305 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 PIAS1O75925 651 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 SEC24DO94855 1032 aaPredicted RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 S100BP04271 92 aaPredicted RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 SERPIND1P05546 499 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 ZNF888P0CJ79 500 aaPredicted RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 SLC35E2BP0CK96 405 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 RBBP5Q15291 538 aaKnown RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 NR6A1Q15406 480 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 OR4D1Q15615 310 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 TBCCQ15814 346 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 BTBD16Q32M84 506 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 FAM180AQ6UWF9 173 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 LANCL3Q6ZV70 420 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 LRRC70Q7Z2Q7 622 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 TBC1D1Q86TI0 1168 aaPredicted RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 CCDC25Q86WR0 208 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 C17orf53Q8N3J3 647 aaPredicted RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 SIRT6Q8N6T7 355 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 PPM1NQ8N819 430 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 BCORP1Q8N888 145 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 OR5T3Q8NGG3 340 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 DNAJB8Q8NHS0 232 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 ADAMTS18Q8TE60 1221 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 GRHL3Q8TE85 626 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 FBF1Q8TES7 1133 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 PTCD3Q96EY7 689 aaKnown RBP11.14□□□□□ -0.63
VRK1-204ENST00000555351 SLX1AQ9BQ83 275 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms