RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CYP7B1O75881 506 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SEMA3DO95025 777 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 EOMESO95936 686 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SLC10A3P09131 477 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 PRPS1L1P21108 318 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 ETV6P41212 452 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 HTR3AP46098 478 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 PXNP49023 591 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 MVDP53602 400 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 CDH12P55289 794 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 PFN3P60673 137 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 RAE1P78406 368 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SRSF11Q05519 484 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 CHIT1Q13231 466 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 DDX39BQ13838 428 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 RGNQ15493 299 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 TAF1CQ15572 869 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 TSTQ16762 297 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 EXOC3L2Q2M3D2 409 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 CDKL4Q5MAI5 379 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 ATAD3CQ5T2N8 411 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 HECTD3Q5T447 861 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF648Q5T619 568 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 LYPLAL1Q5VWZ2 237 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 THOC7Q6I9Y2 204 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 FUT10Q6P4F1 479 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 C19orf48Q6RUI8 117 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 LRRC70Q7Z2Q7 622 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 NANOGNBQ7Z5D8 188 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 NRARPQ7Z6K4 114 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 GATAD2AQ86YP4 633 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 B3GNT7Q8NFL0 401 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 KBTBD8Q8NFY9 601 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 OR8J2Q8NGG1 315 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SPPL2AQ8TCT8 520 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 UTP15Q8TED0 518 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SKA2Q8WVK7 121 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 ASB11Q8WXH4 323 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 C11orf24Q96F05 449 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 TRMT61AQ96FX7 289 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SAMD11Q96NU1 681 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 COL21A1Q96P44 957 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 FAM193BQ96PV7 902 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 OR2A14Q96R47 310 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 CDK5RAP1Q96SZ6 601 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 COPS8Q99627 209 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 DOHHQ9BU89 302 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SLC12A9Q9BXP2 914 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 BARHL1Q9BZE3 327 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 NUAK2Q9H093 628 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 MS4A12Q9NXJ0 267 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 RAPGEFL1Q9UHV5 662 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 EXO1Q9UQ84 846 aaKnown RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 PADI2Q9Y2J8 665 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 PCDHGB3Q9Y5G1 929 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 PNMA8CA0A1B0GUJ8 204 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 SERTM1A2A2V5 107 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 AGRPO00253 132 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 PCDH17O14917 1159 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 ZW10O43264 779 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 GUCY1B2O75343 617 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 MTX2O75431 263 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 APOA1P02647 267 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 ABCB1P08183 1280 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-212ENST00000552491 CKBP12277 381 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 ETFAP13804 333 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 JUPP14923 745 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 CXCR2P25025 360 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 TNFSF8P32971 234 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 SPAM1P38567 509 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 RFX2P48378 723 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 DEFA1P59665 94 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 DEFA3P59666 94 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 SELENOWP63302 87 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 HKDC1Q2TB90 917 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF385BQ569K4 471 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 LRRC73Q5JTD7 316 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 FAM26DQ5JW98 314 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 CCSAPQ6IQ19 270 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-212ENST00000552491 CRTC1Q6UUV9 634 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 TPGS1Q6ZTW0 290 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 WDR53Q7Z5U6 358 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-212ENST00000552491 UBQLNLQ8IYU4 475 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 LGI4Q8N135 537 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 STX19Q8N4C7 294 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 WDR20Q8TBZ3 569 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 PLD4Q96BZ4 506 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 ST6GAL2Q96JF0 529 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 MCCC1Q96RQ3 725 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-212ENST00000552491 C19orf43Q9BQ61 176 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 DUSP26Q9BV47 211 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 KLF16Q9BXK1 252 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-212ENST00000552491 ARHGAP39Q9C0H5 1083 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 NMRK2Q9NPI5 230 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 PLSCR3Q9NRY6 295 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 FAM120CQ9NX05 1096 aaKnown RBP5.21□□□□□ -1.58
LIMA1-212ENST00000552491 KCTD5Q9NXV2 234 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 NPAP1Q9NZP6 1156 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 KLK4Q9Y5K2 254 aa5.21□□□□□ -1.58
LIMA1-212ENST00000552491 AP1M2Q9Y6Q5 423 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms