RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 KIAA0930Q6ICG6 404 aaPredicted RBP14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 ZNF425Q6IV72 752 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 KRT222Q8N1A0 295 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 NFAM1Q8NET5 270 aaPredicted RBP14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 ASZ1Q8WWH4 475 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 GBA3Q9H227 469 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 LDAHQ9H6V9 325 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 UBTD1Q9HAC8 227 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 SPTLC3Q9NUV7 552 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 TENM1Q9UKZ4 2725 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 PCDHA13Q9Y5I0 950 aa14.28□□□□□ -0.12
CLSTN3-216ENST00000545663 ZNF860A6NHJ4 632 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 A8MUA0 341 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 ANXA9O76027 345 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 GOSR1O95249 250 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 CEACAM8P31997 349 aaPredicted RBP14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 PTH2RP49190 550 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 ZNF136P52737 540 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 HYAL2Q12891 473 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 TSTA3Q13630 321 aaPredicted RBP14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 TCEAL1Q15170 157 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 ACKR1Q16570 336 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 TTC23LQ6PF05 361 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 RGS9BPQ6ZS82 235 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 PCGF5Q86SE9 256 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 TMEM139Q8IV31 216 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 OR5T3Q8NGG3 340 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 SMPDL3BQ92485 455 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 SARAFQ96BY9 339 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 HAUS1Q96CS2 278 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 C19orf43Q9BQ61 176 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 TSGA10Q9BZW7 698 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 LIN28AQ9H9Z2 209 aaKnown RBP14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 C6orf203Q9P0P8 240 aaPredicted RBP14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 CTTNBP2NLQ9P2B4 639 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 ERVK-11Q9UQG0 969 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 ARHGAP21Q5T5U3 1957 aa14.27□□□□□ -0.13
CLSTN3-216ENST00000545663 TRBV11-1A0A0K0K1C0 115 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 RNF223E7ERA6 249 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 TXNDC9O14530 226 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 SIAH2O43255 324 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 SUSD5O60279 629 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 PHF2O75151 1096 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 KRT1P04264 644 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 GABRA1P14867 456 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 NR2C2P49116 596 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 SORDQ00796 357 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 KIF5AQ12840 1032 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 MFSD7Q6UXD7 560 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 VN1R4Q7Z5H5 301 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 KIAA1328Q86T90 577 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 FAM109AQ8N4B1 249 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 ZCCHC10Q8TBK6 192 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 SKA2Q8WVK7 121 aaPredicted RBP14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 SREK1Q8WXA9 508 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 DACH2Q96NX9 599 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 VAT1Q99536 393 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 EXO5Q9H790 373 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 SEMA4BQ9NPR2 832 aaPredicted RBP14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 ZNF629Q9UEG4 869 aaPredicted RBP14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 TSR3Q9UJK0 312 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 FBXW2Q9UKT8 454 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 TRHDEQ9UKU6 1024 aa14.26□□□□□ -0.13
CLSTN3-216ENST00000545663 CCDC162PA2VCL2 907 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 SH3D21A4FU49 640 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 BTNL10A8MVZ5 291 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 EEF1E1-BLOC1S5C9J1V9 151 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 EEF1E1O43324 174 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 CST8O60676 142 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 APOA4P06727 396 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 CCDC175P0C221 793 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 PKMP14618 531 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 EZRP15311 586 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 MSNP26038 577 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 AOAHP28039 575 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 PSMB4P28070 264 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 FOXN2P32314 431 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 RPA3P35244 121 aaPredicted RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 HADHBP55084 474 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 BTG2P78543 158 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 SLC10A1Q14973 349 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 ZNF750Q32MQ0 723 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 CHRFAM7AQ494W8 412 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 XKR6Q5GH73 641 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 NDUFAF5Q5TEU4 345 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 IL20RBQ6UXL0 311 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 ADCK2Q7Z695 626 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 CCDC50Q8IVM0 306 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 RAB42Q8N4Z0 105 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 MCOLN3Q8TDD5 553 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 PLA2G12AQ9BZM1 189 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 GSX2Q9BZM3 304 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 PIH1D1Q9NWS0 290 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 TAC3Q9UHF0 121 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 EIF3LQ9Y262 564 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 PCDHA3Q9Y5H8 950 aa14.25□□□□□ -0.13
CLSTN3-216ENST00000545663 HEATR5BQ9P2D3 2071 aa14.24□□□□□ -0.13
CLSTN3-216ENST00000545663 TRGV5A0A0B4J1U4 118 aa14.24□□□□□ -0.13
CLSTN3-216ENST00000545663 SAGE2PA6NJ88 616 aa14.24□□□□□ -0.13
CLSTN3-216ENST00000545663 SPRY1O43609 319 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms