RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RTP4Q96DX8 246 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TCEAL4Q96EI5 215 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 JSRP1Q96MG2 331 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SLC2A13Q96QE2 648 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 CGREF1Q99674 301 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 LRRN3Q9H3W5 708 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 IDSB3KWA1 339 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 FFAR3O14843 346 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GPR42O15529 346 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PCDH7O60245 1069 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GADD45AP24522 165 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ECHS1P30084 290 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PTGS2P35354 604 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ARG2P78540 354 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GPR153Q6NV75 609 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TEX29Q8N6K0 151 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF461Q8TAF7 563 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 LCN9Q8WX39 176 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GIMAP5Q96F15 307 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 HIST1H2AAQ96QV6 131 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 IFT27Q9BW83 186 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 CD244Q9BZW8 370 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SLC6A15Q9H2J7 730 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 WDR26Q9H7D7 661 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 IMP3Q9NV31 184 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 MCUBQ9NWR8 336 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SIX4Q9UIU6 781 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ALG5Q9Y673 324 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SEMA4FO95754 770 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 IFNA1P01562 189 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ATP1B2P14415 290 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CCR4P51679 360 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PLA2G4EQ3MJ16 856 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TMEM35AQ53FP2 167 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 OLFML2AQ68BL7 652 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TOMM5Q8N4H5 51 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 C1orf127Q8N9H9 656 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 OR52K2Q8NGK3 314 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 LENG8Q96PV6 779 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 MECRQ9BV79 373 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ASPNQ9BXN1 380 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 RHBGQ9H310 441 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 INPP5EQ9NRR6 644 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 FBXW2Q9UKT8 454 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TESMINQ9Y4I5 508 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 HCN1O60741 890 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 BANF1O75531 89 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 KAT7O95251 611 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PTTG1O95997 202 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CYP17A1P05093 508 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 MYH7P12883 1935 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CSNK2A2P19784 350 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 LEPRP48357 1165 aaKnown RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SCAPQ12770 1279 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ABCA11PQ4W5N1 156 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PERM1Q5SV97 790 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CST9Q5W186 159 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PRSS55Q6UWB4 352 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF517Q6ZMY9 492 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SATL1Q86VE3 508 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 C12orf76Q8N812 135 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 GALNT6Q8NCL4 622 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 IP6K3Q96PC2 410 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SMAD5Q99717 465 aaKnown RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF559Q9BR84 538 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SLC30A2Q9BRI3 323 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TPSD1Q9BZJ3 242 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 HOXD1Q9GZZ0 328 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TAS2R8Q9NYW2 309 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PTTG3PQ9NZH4 202 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 GHRLQ9UBU3 117 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 A0A1W2PRB8 838 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 HYKKA2RU49 373 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SCAMP3O14828 347 aaKnown RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 MYF6P23409 242 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 BRCC3P46736 316 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 NRG1Q02297 640 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 RING1Q06587 406 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TAF10Q12962 218 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CHIT1Q13231 466 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 DHCR24Q15392 516 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 FAM214AQ32MH5 1076 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF678Q5SXM1 525 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TPRG1LQ5T0D9 272 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 GOLGA7Q7Z5G4 137 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TRAM1L1Q8N609 369 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PLEKHO2Q8TD55 490 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 GATA5Q9BWX5 397 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PLEKHA1Q9HB21 404 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 WNT16Q9UBV4 365 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 UBQLN2Q9UHD9 624 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ACSL5Q9ULC5 683 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ARL5CA6NH57 179 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PPEF2O14830 753 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 EDN1P05305 212 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ITGAMP11215 1152 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 MTHFD1P11586 935 aaKnown RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 DRD2P14416 443 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PEX2P28328 305 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 RPS3AP61247 264 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms