RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 PRR20EP86478 221 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 PRR20CP86479 221 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 PRR20DP86480 221 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 PRR20BP86481 221 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 PRR20AP86496 221 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TRA2AQ13595 282 aaKnown RBP eCLIP8.9□□□□□ -0.98
DDX55-208ENST00000541259 ISXQ2M1V0 245 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TUBB8Q3ZCM7 444 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 ZC3H12BQ5HYM0 836 aaKnown RBP8.9□□□□□ -0.98
DDX55-208ENST00000541259 TOR1AIP1Q5JTV8 583 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TMTC4Q5T4D3 741 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 HES3Q5TGS1 186 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TRIM46Q7Z4K8 759 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 UBE3DQ7Z6J8 389 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 ASPGQ86U10 573 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 MARCH9Q86YJ5 346 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 CCDC116Q8IYX3 515 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 AFAP1L2Q8N4X5 818 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TBC1D19Q8N5T2 526 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 PLPP7Q8NBV4 271 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TRPV3Q8NET8 790 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 OR1L3Q8NH93 324 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 NT5CQ8TCD5 201 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 ZNF501Q96CX3 271 aaPredicted RBP8.9□□□□□ -0.98
DDX55-208ENST00000541259 C19orf60Q96EN9 201 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 FAR2Q96K12 515 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 OR52B2Q96RD2 323 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 CCT8L2Q96SF2 557 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 SORBS1Q9BX66 1292 aaKnown RBP8.9□□□□□ -0.98
DDX55-208ENST00000541259 TMEM120AQ9BXJ8 343 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 MS4A8Q9BY19 250 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 TRIM55Q9BYV6 548 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 AKTIPQ9H8T0 292 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 ADGRE2Q9UHX3 823 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 SLC12A4Q9UP95 1085 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 PLCL2Q9UPR0 1127 aa8.9□□□□□ -0.98
DDX55-208ENST00000541259 MRPS2Q9Y399 296 aaKnown RBP8.9□□□□□ -0.98
DDX55-208ENST00000541259 NUP214P35658 2090 aaPredicted RBP8.9□□□□□ -0.99
DDX55-208ENST00000541259 SPTBN4Q9H254 2564 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SPTBN2O15020 2390 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 A0A1W2PNU3 283 aaPredicted RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 DCDC2BA2VCK2 349 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 PMS2P1A4D2B8 440 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 LRIT2A6NDA9 550 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 TRPC5OSA6NMA1 111 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SRRM3A6NNA2 597 aaPredicted RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 EFCAB7A8K855 629 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 RTCAO00442 366 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 RGS14O43566 566 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SNX3O60493 162 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 DIAPH2O60879 1101 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 PEX11AO75192 247 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SERPINA6P08185 405 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 TROVE2P10155 538 aaKnown RBP eCLIP8.89□□□□□ -0.99
DDX55-208ENST00000541259 PTX3P26022 381 aaPredicted RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 CCKBRP32239 447 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 CSTF2P33240 577 aaKnown RBP eCLIP8.89□□□□□ -0.99
DDX55-208ENST00000541259 HK2P52789 917 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 FOXM1Q08050 763 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 TBL3Q12788 808 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 CSTF3Q12996 717 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 PWP1Q13610 501 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 IMPG1Q17R60 797 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 PRTGQ2VWP7 1150 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 LSM12Q3MHD2 195 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 GALNTL6Q49A17 601 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SPDYAQ5MJ70 313 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 DEPDC1Q5TB30 811 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 PRAMEF17Q5VTA0 474 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 KHDRBS2Q5VWX1 349 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 RNF165Q6ZSG1 346 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SPATA21Q7Z572 469 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 PIGWQ7Z7B1 504 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 ALYREFQ86V81 257 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 KIRREL3Q8IZU9 778 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 CHCHD4Q8N4Q1 142 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 DTWD1Q8N5C7 304 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 CSNK1A1LQ8N752 337 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 GBP7Q8N8V2 638 aaPredicted RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 AMER3Q8N944 861 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 TTLQ8NG68 377 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 ZCCHC10Q8TBK6 192 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 C10orf82Q8WW14 230 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 RERGQ96A58 199 aaPredicted RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 TUBGCP3Q96CW5 907 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 MS4A6EQ96DS6 147 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 CMTM7Q96FZ5 175 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 APIPQ96GX9 242 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 MAELQ96JY0 434 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 ZNF285Q96NJ3 590 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 TMEM74Q96NL1 305 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 OR6C1Q96RD1 312 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 MRPL1Q9BYD6 325 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 BRF2Q9HAW0 419 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 APMAPQ9HDC9 416 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 FGF21Q9NSA1 209 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 SIDT1Q9NXL6 827 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 PSD3Q9NYI0 1048 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 DLL3Q9NYJ7 618 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 KLHL14Q9P2G3 628 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms