RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 RP1L1Q8IWN7 2480 aaPredicted RBP13.96□□□□□ -0.17
USP28-204ENST00000537642 C4orf51C9J302 202 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 H2AFYO75367 372 aaKnown RBP13.96□□□□□ -0.17
USP28-204ENST00000537642 STK16O75716 305 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 ACSL3O95573 720 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 C2P06681 752 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 SERPINA6P08185 405 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 CELA2AP08217 269 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 CYC1P08574 325 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 PRR35P0CG20 571 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 HNF4AP41235 474 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 OLR1P78380 273 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 IRF9Q00978 393 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 INPP5JQ15735 1006 aaPredicted RBP13.96□□□□□ -0.17
USP28-204ENST00000537642 UAP1Q16222 522 aaPredicted RBP13.96□□□□□ -0.17
USP28-204ENST00000537642 Q6ZS92 163 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 ABHD13Q7L211 337 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 CENPLQ8N0S6 344 aaPredicted RBP13.96□□□□□ -0.17
USP28-204ENST00000537642 ZADH2Q8N4Q0 377 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 KCTD4Q8WVF5 259 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 METTL21AQ8WXB1 218 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 PSMF1Q92530 271 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 TM9SF4Q92544 642 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 CAPS2Q9BXY5 557 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 RBCK1Q9BYM8 510 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 TSPYL1Q9H0U9 437 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 SNX15Q9NRS6 342 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 LANCL2Q9NS86 450 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 RIC8BQ9NVN3 520 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 COPG2Q9UBF2 871 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 B3GNT3Q9Y2A9 372 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 ACOT9Q9Y305 439 aa13.96□□□□□ -0.17
USP28-204ENST00000537642 A0A087X1B8 175 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 IGHV3-20A0A0C4DH32 117 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 SUPT3HB4E1H0 165 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 UBXN8O00124 270 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 CLGNO14967 610 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 CHST10O43529 356 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 KERAO60938 352 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 SUPT3HO75486 399 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 S100BP04271 92 aaPredicted RBP13.95□□□□□ -0.18
USP28-204ENST00000537642 SERPINA7P05543 415 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 EPORP19235 508 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 RAB8AP61006 207 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 RHAGQ02094 409 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 PDK4Q16654 411 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 TOR1AIP1Q5JTV8 583 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 ISLR2Q6UXK2 745 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 TMIGD1Q6UXZ0 262 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 VN1R5Q7Z5H4 357 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 CPEB2Q7Z5Q1 589 aaKnown RBP13.95□□□□□ -0.18
USP28-204ENST00000537642 CCDC91Q7Z6B0 441 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 ANKRD37Q7Z713 158 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 KRT78Q8N1N4 520 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 CEP112Q8N8E3 955 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 SNX31Q8N9S9 440 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 PLPP5Q8NEB5 264 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 BRIX1Q8TDN6 353 aaKnown RBP13.95□□□□□ -0.18
USP28-204ENST00000537642 SLC44A1Q8WWI5 657 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 TRIM44Q96DX7 344 aaPredicted RBP13.95□□□□□ -0.18
USP28-204ENST00000537642 IMMP1LQ96LU5 166 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 OR1F2PQ96R84 312 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 EHD1Q9H4M9 534 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 NT5DC2Q9H857 520 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 NUDT4Q9NZJ9 180 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 CPAMD8Q8IZJ3 1885 aa13.95□□□□□ -0.18
USP28-204ENST00000537642 URADA6NGE7 173 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 CCNT2O60583 730 aaKnown RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 CDC123O75794 336 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 SEC24DO94855 1032 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 TBX6O95947 436 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 ALDOAP04075 364 aaKnown RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 FHP07954 510 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 ITGAMP11215 1152 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 MTHFD2P13995 350 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 CD22P20273 847 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 IL10P22301 178 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 SOX11P35716 441 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 AGTR2P50052 363 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 SERPINB8P50452 374 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 SKP1P63208 163 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 MFAP5Q13361 173 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 DOC2AQ14183 400 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 NIPAL1Q6NVV3 410 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 LINC00696Q6ZRV3 163 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 LRRC70Q7Z2Q7 622 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 CUZD1Q86UP6 607 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 ATCAYQ86WG3 371 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 EFCAB3Q8N7B9 438 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 TTLQ8NG68 377 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 PPP4R1Q8TF05 950 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 UBTD2Q8WUN7 234 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 TBC1D20Q96BZ9 403 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 WDR34Q96EX3 536 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 LMF1Q96S06 567 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 WDR77Q9BQA1 342 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 TUBB6Q9BUF5 446 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 CD244Q9BZW8 370 aa13.94□□□□□ -0.18
USP28-204ENST00000537642 PITHD1Q9GZP4 211 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 ILKAPQ9H0C8 392 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms